Hb_029223_040

Information

Type -
Description -
Location Contig29223: 14954-16126
Sequence    

Annotation

kegg
ID rcu:RCOM_1354270
description s-adenosylmethionine synthetase, putative (EC:2.5.1.6)
nr
ID XP_002519480.1
description s-adenosylmethionine synthetase, putative [Ricinus communis]
swissprot
ID Q6SYB9
description S-adenosylmethionine synthase 2 OS=Nicotiana tabacum GN=SAMS2 PE=2 SV=1
trembl
ID B9S0G1
description S-adenosylmethionine synthase OS=Ricinus communis GN=RCOM_1354270 PE=3 SV=1
Gene Ontology
ID GO:0005829
description s-adenosylmethionine synthase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30641: 14649-16680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029223_040 0.0 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
2 Hb_030565_100 0.0918798772 - - serine hydroxymethyltransferase, putative [Ricinus communis]
3 Hb_000236_180 0.1128388245 - - serine hydroxymethyltransferase, putative [Ricinus communis]
4 Hb_000077_100 0.1190673615 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
5 Hb_134014_010 0.1234423437 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
6 Hb_003470_110 0.1240630025 - - unnamed protein product [Vitis vinifera]
7 Hb_000806_130 0.1267417715 - - Adenosine kinase 2 [Theobroma cacao]
8 Hb_000580_110 0.1268441073 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
9 Hb_006615_230 0.1271981908 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
10 Hb_001329_180 0.135804882 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
11 Hb_001119_070 0.1368780456 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
12 Hb_000696_070 0.1408013355 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
13 Hb_031089_020 0.1414005382 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
14 Hb_000463_120 0.1422202378 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
15 Hb_007590_100 0.1468430278 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
16 Hb_000300_420 0.1474262174 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
17 Hb_084147_010 0.148424539 - - amino acid transporter, putative [Ricinus communis]
18 Hb_010883_180 0.1516746628 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
19 Hb_000297_140 0.1521610426 - - hypothetical protein RCOM_0293450 [Ricinus communis]
20 Hb_000959_130 0.1521749605 - - organic anion transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_029223_040 Hb_029223_040 Hb_030565_100 Hb_030565_100 Hb_029223_040--Hb_030565_100 Hb_000236_180 Hb_000236_180 Hb_029223_040--Hb_000236_180 Hb_000077_100 Hb_000077_100 Hb_029223_040--Hb_000077_100 Hb_134014_010 Hb_134014_010 Hb_029223_040--Hb_134014_010 Hb_003470_110 Hb_003470_110 Hb_029223_040--Hb_003470_110 Hb_000806_130 Hb_000806_130 Hb_029223_040--Hb_000806_130 Hb_030565_100--Hb_000077_100 Hb_030565_100--Hb_000236_180 Hb_174541_030 Hb_174541_030 Hb_030565_100--Hb_174541_030 Hb_030565_100--Hb_003470_110 Hb_000297_140 Hb_000297_140 Hb_030565_100--Hb_000297_140 Hb_000580_110 Hb_000580_110 Hb_000236_180--Hb_000580_110 Hb_000236_180--Hb_003470_110 Hb_000417_380 Hb_000417_380 Hb_000236_180--Hb_000417_380 Hb_006615_230 Hb_006615_230 Hb_000236_180--Hb_006615_230 Hb_000236_180--Hb_000077_100 Hb_000820_110 Hb_000820_110 Hb_000077_100--Hb_000820_110 Hb_000193_210 Hb_000193_210 Hb_000077_100--Hb_000193_210 Hb_000077_100--Hb_000580_110 Hb_134014_010--Hb_006615_230 Hb_189003_070 Hb_189003_070 Hb_134014_010--Hb_189003_070 Hb_000959_130 Hb_000959_130 Hb_134014_010--Hb_000959_130 Hb_012395_050 Hb_012395_050 Hb_134014_010--Hb_012395_050 Hb_158092_040 Hb_158092_040 Hb_134014_010--Hb_158092_040 Hb_031089_020 Hb_031089_020 Hb_003470_110--Hb_031089_020 Hb_098795_030 Hb_098795_030 Hb_003470_110--Hb_098795_030 Hb_003470_110--Hb_006615_230 Hb_084147_010 Hb_084147_010 Hb_003470_110--Hb_084147_010 Hb_001486_350 Hb_001486_350 Hb_000806_130--Hb_001486_350 Hb_001329_180 Hb_001329_180 Hb_000806_130--Hb_001329_180 Hb_000696_070 Hb_000696_070 Hb_000806_130--Hb_000696_070 Hb_000236_190 Hb_000236_190 Hb_000806_130--Hb_000236_190 Hb_001119_070 Hb_001119_070 Hb_000806_130--Hb_001119_070 Hb_000300_420 Hb_000300_420 Hb_000806_130--Hb_000300_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.32546 31.2512 81.746 361.401 2.97557 12.0701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.37901 31.2215 16.7576 89.9393 149.533

CAGE analysis