Hb_029243_010

Information

Type -
Description -
Location Contig29243: 5230-6246
Sequence    

Annotation

kegg
ID rcu:RCOM_0664840
description hypothetical protein
nr
ID XP_012089727.1
description PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LZX1
description Protein LURP-one-related 15 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1
trembl
ID B9T6F6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0664840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029243_010 0.0 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
2 Hb_012008_010 0.1433934261 - - -
3 Hb_000418_080 0.2173226238 - - PREDICTED: uncharacterized protein LOC105124652 [Populus euphratica]
4 Hb_009233_030 0.2293958895 - - protein binding protein, putative [Ricinus communis]
5 Hb_001507_030 0.2465124068 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
6 Hb_001771_080 0.2481252308 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Amborella trichopoda]
7 Hb_002272_010 0.2486768971 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006096_010 0.2507773504 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005663_070 0.2552476501 - - dehydrin protein [Manihot esculenta]
10 Hb_002157_090 0.2586683426 - - hypothetical protein VITISV_041741 [Vitis vinifera]
11 Hb_002341_020 0.2616796255 - - PREDICTED: pyruvate decarboxylase 2 [Populus euphratica]
12 Hb_004116_130 0.2753733362 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
13 Hb_003687_030 0.275796003 - - protein phosphatase 2c, putative [Ricinus communis]
14 Hb_005045_050 0.2813802786 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 3 [Jatropha curcas]
15 Hb_118094_010 0.2822895182 - - hypothetical protein POPTR_0011s06595g [Populus trichocarpa]
16 Hb_004102_030 0.2834040091 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
17 Hb_006907_080 0.2843683584 - - PREDICTED: RPM1-interacting protein 4-like [Jatropha curcas]
18 Hb_000891_030 0.2851758595 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
19 Hb_005363_010 0.2854889936 - - hypothetical protein JCGZ_13835 [Jatropha curcas]
20 Hb_002110_240 0.2866286991 - - clathrin assembly protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_029243_010 Hb_029243_010 Hb_012008_010 Hb_012008_010 Hb_029243_010--Hb_012008_010 Hb_000418_080 Hb_000418_080 Hb_029243_010--Hb_000418_080 Hb_009233_030 Hb_009233_030 Hb_029243_010--Hb_009233_030 Hb_001507_030 Hb_001507_030 Hb_029243_010--Hb_001507_030 Hb_001771_080 Hb_001771_080 Hb_029243_010--Hb_001771_080 Hb_002272_010 Hb_002272_010 Hb_029243_010--Hb_002272_010 Hb_012008_010--Hb_001771_080 Hb_002157_090 Hb_002157_090 Hb_012008_010--Hb_002157_090 Hb_004102_030 Hb_004102_030 Hb_012008_010--Hb_004102_030 Hb_007558_020 Hb_007558_020 Hb_012008_010--Hb_007558_020 Hb_012008_010--Hb_000418_080 Hb_000891_030 Hb_000891_030 Hb_000418_080--Hb_000891_030 Hb_140049_010 Hb_140049_010 Hb_000418_080--Hb_140049_010 Hb_006907_080 Hb_006907_080 Hb_000418_080--Hb_006907_080 Hb_000418_080--Hb_001507_030 Hb_003687_030 Hb_003687_030 Hb_000418_080--Hb_003687_030 Hb_002110_240 Hb_002110_240 Hb_009233_030--Hb_002110_240 Hb_005663_070 Hb_005663_070 Hb_009233_030--Hb_005663_070 Hb_000256_130 Hb_000256_130 Hb_009233_030--Hb_000256_130 Hb_006909_060 Hb_006909_060 Hb_009233_030--Hb_006909_060 Hb_000008_110 Hb_000008_110 Hb_009233_030--Hb_000008_110 Hb_000023_250 Hb_000023_250 Hb_009233_030--Hb_000023_250 Hb_001511_190 Hb_001511_190 Hb_001507_030--Hb_001511_190 Hb_001507_030--Hb_005663_070 Hb_001944_020 Hb_001944_020 Hb_001507_030--Hb_001944_020 Hb_003020_180 Hb_003020_180 Hb_001507_030--Hb_003020_180 Hb_002450_030 Hb_002450_030 Hb_001507_030--Hb_002450_030 Hb_002759_260 Hb_002759_260 Hb_001507_030--Hb_002759_260 Hb_104764_010 Hb_104764_010 Hb_001771_080--Hb_104764_010 Hb_001771_080--Hb_007558_020 Hb_098533_020 Hb_098533_020 Hb_001771_080--Hb_098533_020 Hb_006907_100 Hb_006907_100 Hb_001771_080--Hb_006907_100 Hb_062038_010 Hb_062038_010 Hb_001771_080--Hb_062038_010 Hb_000394_110 Hb_000394_110 Hb_001771_080--Hb_000394_110 Hb_006096_010 Hb_006096_010 Hb_002272_010--Hb_006096_010 Hb_000486_070 Hb_000486_070 Hb_002272_010--Hb_000486_070 Hb_002272_010--Hb_009233_030 Hb_002272_010--Hb_000256_130 Hb_003225_030 Hb_003225_030 Hb_002272_010--Hb_003225_030 Hb_000649_240 Hb_000649_240 Hb_002272_010--Hb_000649_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.423486 3.14587 0.52277 2.13677 0.0394545 0.104627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.63427 2.21341 0.504553 0.0583278 0

CAGE analysis