Hb_029243_030

Information

Type -
Description -
Location Contig29243: 17983-32647
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10720g
description POPTRDRAFT_762562; transducin family protein
nr
ID XP_012089724.1
description PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
swissprot
ID Q93YQ1
description Regulatory-associated protein of TOR 1 OS=Arabidopsis thaliana GN=RAPTOR1 PE=1 SV=1
trembl
ID A0A067JJ24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00385 PE=4 SV=1
Gene Ontology
ID GO:0031931
description transducin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30652: 17959-22122 , PASA_asmbl_30653: 18173-22178
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029243_030 0.0 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
2 Hb_000574_450 0.0463631453 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
3 Hb_001999_310 0.0577403987 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
4 Hb_010515_020 0.0602549436 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
5 Hb_001500_140 0.0603528651 - - pelota, putative [Ricinus communis]
6 Hb_027073_020 0.0613725193 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
7 Hb_002989_020 0.0631024982 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
8 Hb_004567_090 0.0635905298 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
9 Hb_001671_100 0.065340423 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
10 Hb_011063_050 0.0655040457 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
11 Hb_000078_120 0.067305182 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
12 Hb_001876_050 0.0674958633 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
13 Hb_006452_120 0.0684139473 - - PREDICTED: protein FAM188A [Jatropha curcas]
14 Hb_005663_110 0.0695537316 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
15 Hb_004109_080 0.0696146325 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
16 Hb_010142_020 0.0712591624 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001417_030 0.0724553598 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
18 Hb_000111_290 0.0727124345 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
19 Hb_000984_170 0.0734195726 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
20 Hb_000917_230 0.0735093481 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]

Gene co-expression network

sample Hb_029243_030 Hb_029243_030 Hb_000574_450 Hb_000574_450 Hb_029243_030--Hb_000574_450 Hb_001999_310 Hb_001999_310 Hb_029243_030--Hb_001999_310 Hb_010515_020 Hb_010515_020 Hb_029243_030--Hb_010515_020 Hb_001500_140 Hb_001500_140 Hb_029243_030--Hb_001500_140 Hb_027073_020 Hb_027073_020 Hb_029243_030--Hb_027073_020 Hb_002989_020 Hb_002989_020 Hb_029243_030--Hb_002989_020 Hb_149985_010 Hb_149985_010 Hb_000574_450--Hb_149985_010 Hb_000487_270 Hb_000487_270 Hb_000574_450--Hb_000487_270 Hb_000574_450--Hb_010515_020 Hb_006452_120 Hb_006452_120 Hb_000574_450--Hb_006452_120 Hb_000574_450--Hb_001500_140 Hb_001671_100 Hb_001671_100 Hb_001999_310--Hb_001671_100 Hb_001999_310--Hb_027073_020 Hb_000614_240 Hb_000614_240 Hb_001999_310--Hb_000614_240 Hb_001876_050 Hb_001876_050 Hb_001999_310--Hb_001876_050 Hb_001999_310--Hb_001500_140 Hb_010515_020--Hb_006452_120 Hb_010515_020--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_010515_020--Hb_011063_050 Hb_002830_010 Hb_002830_010 Hb_010515_020--Hb_002830_010 Hb_001584_120 Hb_001584_120 Hb_001500_140--Hb_001584_120 Hb_010142_020 Hb_010142_020 Hb_001500_140--Hb_010142_020 Hb_093458_040 Hb_093458_040 Hb_001500_140--Hb_093458_040 Hb_000140_290 Hb_000140_290 Hb_001500_140--Hb_000140_290 Hb_001789_110 Hb_001789_110 Hb_027073_020--Hb_001789_110 Hb_000789_200 Hb_000789_200 Hb_027073_020--Hb_000789_200 Hb_122968_010 Hb_122968_010 Hb_027073_020--Hb_122968_010 Hb_000406_200 Hb_000406_200 Hb_027073_020--Hb_000406_200 Hb_000340_530 Hb_000340_530 Hb_002989_020--Hb_000340_530 Hb_002989_020--Hb_011063_050 Hb_002989_020--Hb_010142_020 Hb_002989_020--Hb_093458_040 Hb_000477_050 Hb_000477_050 Hb_002989_020--Hb_000477_050 Hb_001679_050 Hb_001679_050 Hb_002989_020--Hb_001679_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.15437 9.60677 6.66288 13.0815 6.81917 9.06758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.61538 11.1092 8.21201 12.9823 11.6517

CAGE analysis