Hb_029243_040

Information

Type -
Description -
Location Contig29243: 41428-45648
Sequence    

Annotation

kegg
ID rcu:RCOM_1230590
description alanine-glyoxylate aminotransferase, putative (EC:2.6.1.44)
nr
ID XP_011003581.1
description PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Populus euphratica]
swissprot
ID Q9SR86
description Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At3g08860 PE=2 SV=1
trembl
ID B9SZ94
description Alanine-glyoxylate aminotransferase, putative OS=Ricinus communis GN=RCOM_1230590 PE=3 SV=1
Gene Ontology
ID GO:0008483
description alanine--glyoxylate aminotransferase 2 homolog mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30656: 41688-45634 , PASA_asmbl_30657: 41688-45634 , PASA_asmbl_30658: 42446-45634 , PASA_asmbl_30659: 42446-45634 , PASA_asmbl_30660: 41688-43287 , PASA_asmbl_30661: 44854-45300 , PASA_asmbl_30662: 44106-44353 , PASA_asmbl_30663: 43617-43974 , PASA_asmbl_30664: 43299-43519
cDNA
(Sanger)
(ID:Location)		 020_H11.ab1: 43050-45628 , 052_L07.ab1: 43136-45634

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029243_040 0.0 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Populus euphratica]
2 Hb_000260_580 0.1214283868 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001279_130 0.1369191444 - - hypothetical protein L484_017676 [Morus notabilis]
4 Hb_000896_120 0.1434614425 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
5 Hb_001832_120 0.1436735369 - - hypothetical protein PHAVU_003G136800g [Phaseolus vulgaris]
6 Hb_000215_180 0.1438710992 - - hypothetical protein 17 [Hevea brasiliensis]
7 Hb_002182_090 0.1449676171 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF4.6-like isoform X1 [Gossypium raimondii]
8 Hb_002138_010 0.1487246168 - - hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
9 Hb_001545_060 0.1502936522 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
10 Hb_002014_160 0.150404201 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor C-1 [Jatropha curcas]
11 Hb_002374_400 0.1508786596 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
12 Hb_000922_100 0.1530863912 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
13 Hb_001329_210 0.1559352771 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
14 Hb_183086_040 0.157746221 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
15 Hb_152021_010 0.1599258538 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
16 Hb_002540_030 0.1636608611 - - hypothetical protein 32 [Hevea brasiliensis]
17 Hb_001538_100 0.1654906935 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
18 Hb_012239_100 0.1705304502 - - hypothetical protein VITISV_043897 [Vitis vinifera]
19 Hb_023536_010 0.1711169053 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
20 Hb_000196_090 0.1726406088 - - axonemal dynein light chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_029243_040 Hb_029243_040 Hb_000260_580 Hb_000260_580 Hb_029243_040--Hb_000260_580 Hb_001279_130 Hb_001279_130 Hb_029243_040--Hb_001279_130 Hb_000896_120 Hb_000896_120 Hb_029243_040--Hb_000896_120 Hb_001832_120 Hb_001832_120 Hb_029243_040--Hb_001832_120 Hb_000215_180 Hb_000215_180 Hb_029243_040--Hb_000215_180 Hb_002182_090 Hb_002182_090 Hb_029243_040--Hb_002182_090 Hb_000175_610 Hb_000175_610 Hb_000260_580--Hb_000175_610 Hb_003371_100 Hb_003371_100 Hb_000260_580--Hb_003371_100 Hb_001507_070 Hb_001507_070 Hb_000260_580--Hb_001507_070 Hb_000742_270 Hb_000742_270 Hb_000260_580--Hb_000742_270 Hb_011004_010 Hb_011004_010 Hb_000260_580--Hb_011004_010 Hb_001279_130--Hb_002182_090 Hb_000380_020 Hb_000380_020 Hb_001279_130--Hb_000380_020 Hb_010594_030 Hb_010594_030 Hb_001279_130--Hb_010594_030 Hb_001102_250 Hb_001102_250 Hb_001279_130--Hb_001102_250 Hb_006594_020 Hb_006594_020 Hb_001279_130--Hb_006594_020 Hb_183086_040 Hb_183086_040 Hb_000896_120--Hb_183086_040 Hb_000922_100 Hb_000922_100 Hb_000896_120--Hb_000922_100 Hb_000300_390 Hb_000300_390 Hb_000896_120--Hb_000300_390 Hb_000896_120--Hb_000215_180 Hb_001232_140 Hb_001232_140 Hb_000896_120--Hb_001232_140 Hb_005663_120 Hb_005663_120 Hb_000896_120--Hb_005663_120 Hb_001016_090 Hb_001016_090 Hb_001832_120--Hb_001016_090 Hb_010827_020 Hb_010827_020 Hb_001832_120--Hb_010827_020 Hb_001863_090 Hb_001863_090 Hb_001832_120--Hb_001863_090 Hb_032260_030 Hb_032260_030 Hb_001832_120--Hb_032260_030 Hb_148930_010 Hb_148930_010 Hb_001832_120--Hb_148930_010 Hb_001700_020 Hb_001700_020 Hb_001832_120--Hb_001700_020 Hb_000215_180--Hb_183086_040 Hb_000215_180--Hb_000922_100 Hb_000780_210 Hb_000780_210 Hb_000215_180--Hb_000780_210 Hb_001377_380 Hb_001377_380 Hb_000215_180--Hb_001377_380 Hb_000106_100 Hb_000106_100 Hb_000215_180--Hb_000106_100 Hb_001268_080 Hb_001268_080 Hb_002182_090--Hb_001268_080 Hb_072912_020 Hb_072912_020 Hb_002182_090--Hb_072912_020 Hb_000723_190 Hb_000723_190 Hb_002182_090--Hb_000723_190 Hb_002603_150 Hb_002603_150 Hb_002182_090--Hb_002603_150 Hb_002182_090--Hb_000215_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.2364 11.7909 2.51828 16.4866 14.6987 7.32264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.001 85.6797 66.1468 33.3942 0.831551

CAGE analysis