Hb_029253_010

Information

Type -
Description -
Location Contig29253: 22237-26279
Sequence    

Annotation

kegg
ID rcu:RCOM_1113660
description nucleic acid binding protein, putative
nr
ID XP_012077809.1
description PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
swissprot
ID Q9ZVI3
description KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1 SV=1
trembl
ID A0A067LEL4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17280 PE=4 SV=1
Gene Ontology
ID GO:0003723
description kh domain-containing protein at3g08620-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029253_010 0.0 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
2 Hb_005357_110 0.0737548766 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
3 Hb_003740_020 0.0889091407 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
4 Hb_000032_410 0.0925619442 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
5 Hb_006925_050 0.0930939824 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
6 Hb_091318_010 0.0942987623 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
7 Hb_002374_270 0.0954439408 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000757_130 0.0960872292 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005511_130 0.0971116032 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
10 Hb_004730_020 0.1033834176 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
11 Hb_000922_320 0.1045746195 - - hypothetical protein B456_001G071400 [Gossypium raimondii]
12 Hb_000000_480 0.1117546026 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
13 Hb_003894_030 0.1121300971 - - plant sec1, putative [Ricinus communis]
14 Hb_013405_070 0.1142672522 - - ferric-chelate reductase, putative [Ricinus communis]
15 Hb_001155_050 0.1146348031 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
16 Hb_000915_130 0.1149233712 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
17 Hb_011671_340 0.1153041105 - - small GTPase [Hevea brasiliensis]
18 Hb_012762_040 0.1210256019 - - big map kinase/bmk, putative [Ricinus communis]
19 Hb_000800_020 0.1211501524 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
20 Hb_000984_220 0.1277783761 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]

Gene co-expression network

sample Hb_029253_010 Hb_029253_010 Hb_005357_110 Hb_005357_110 Hb_029253_010--Hb_005357_110 Hb_003740_020 Hb_003740_020 Hb_029253_010--Hb_003740_020 Hb_000032_410 Hb_000032_410 Hb_029253_010--Hb_000032_410 Hb_006925_050 Hb_006925_050 Hb_029253_010--Hb_006925_050 Hb_091318_010 Hb_091318_010 Hb_029253_010--Hb_091318_010 Hb_002374_270 Hb_002374_270 Hb_029253_010--Hb_002374_270 Hb_005357_110--Hb_000032_410 Hb_005357_110--Hb_003740_020 Hb_000915_130 Hb_000915_130 Hb_005357_110--Hb_000915_130 Hb_004730_020 Hb_004730_020 Hb_005357_110--Hb_004730_020 Hb_005511_130 Hb_005511_130 Hb_005357_110--Hb_005511_130 Hb_021409_070 Hb_021409_070 Hb_003740_020--Hb_021409_070 Hb_003740_020--Hb_005511_130 Hb_003740_020--Hb_004730_020 Hb_003740_020--Hb_000032_410 Hb_000032_410--Hb_000915_130 Hb_004545_080 Hb_004545_080 Hb_000032_410--Hb_004545_080 Hb_000032_410--Hb_005511_130 Hb_000032_410--Hb_004730_020 Hb_006925_050--Hb_005511_130 Hb_006925_050--Hb_005357_110 Hb_006925_050--Hb_004730_020 Hb_006829_070 Hb_006829_070 Hb_006925_050--Hb_006829_070 Hb_001847_050 Hb_001847_050 Hb_006925_050--Hb_001847_050 Hb_000008_200 Hb_000008_200 Hb_091318_010--Hb_000008_200 Hb_004679_040 Hb_004679_040 Hb_091318_010--Hb_004679_040 Hb_091318_010--Hb_005357_110 Hb_091318_010--Hb_000032_410 Hb_091318_010--Hb_000915_130 Hb_002235_060 Hb_002235_060 Hb_002374_270--Hb_002235_060 Hb_000940_210 Hb_000940_210 Hb_002374_270--Hb_000940_210 Hb_003964_080 Hb_003964_080 Hb_002374_270--Hb_003964_080 Hb_003894_030 Hb_003894_030 Hb_002374_270--Hb_003894_030 Hb_002374_270--Hb_005357_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.86753 6.80776 18.7841 17.8483 1.2902 1.96931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.83407 3.24794 1.59672 3.93894 8.08391

CAGE analysis