Hb_029259_010

Information

Type -
Description -
Location Contig29259: 1503-2165
Sequence    

Annotation

kegg
ID rcu:RCOM_0294440
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP27362.1
description hypothetical protein JCGZ_20186 [Jatropha curcas]
swissprot
ID Q9FIH2
description Pentatricopeptide repeat-containing protein At5g42450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E102 PE=2 SV=1
trembl
ID A0A067JTZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20186 PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029259_010 0.0 - - hypothetical protein JCGZ_20186 [Jatropha curcas]
2 Hb_026549_020 0.080958584 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_002168_060 0.1014827847 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
4 Hb_001012_010 0.1041450032 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
5 Hb_000731_160 0.1067647398 - - PREDICTED: adenosine deaminase-like protein [Jatropha curcas]
6 Hb_004837_270 0.1162102447 - - PREDICTED: cinnamoyl-CoA reductase 1 [Jatropha curcas]
7 Hb_005144_090 0.1175330082 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
8 Hb_001186_090 0.1196289879 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
9 Hb_004070_020 0.1206364258 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
10 Hb_000260_630 0.121602853 - - PREDICTED: altered inheritance rate of mitochondria protein 25 isoform X1 [Jatropha curcas]
11 Hb_000110_310 0.1222147424 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
12 Hb_010931_070 0.1225974423 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
13 Hb_000007_390 0.123416221 - - hypothetical protein JCGZ_18250 [Jatropha curcas]
14 Hb_182782_010 0.1247781753 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_005588_030 0.1247940291 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
16 Hb_001268_240 0.1263284346 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
17 Hb_000465_090 0.1269070673 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
18 Hb_000468_060 0.1271457734 - - ku P70 DNA helicase, putative [Ricinus communis]
19 Hb_011618_050 0.1275302358 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
20 Hb_003943_050 0.1275626322 - - phosphoglucomutase, putative [Ricinus communis]

Gene co-expression network

sample Hb_029259_010 Hb_029259_010 Hb_026549_020 Hb_026549_020 Hb_029259_010--Hb_026549_020 Hb_002168_060 Hb_002168_060 Hb_029259_010--Hb_002168_060 Hb_001012_010 Hb_001012_010 Hb_029259_010--Hb_001012_010 Hb_000731_160 Hb_000731_160 Hb_029259_010--Hb_000731_160 Hb_004837_270 Hb_004837_270 Hb_029259_010--Hb_004837_270 Hb_005144_090 Hb_005144_090 Hb_029259_010--Hb_005144_090 Hb_001140_270 Hb_001140_270 Hb_026549_020--Hb_001140_270 Hb_010577_030 Hb_010577_030 Hb_026549_020--Hb_010577_030 Hb_000025_030 Hb_000025_030 Hb_026549_020--Hb_000025_030 Hb_026549_020--Hb_001012_010 Hb_007982_080 Hb_007982_080 Hb_026549_020--Hb_007982_080 Hb_000465_090 Hb_000465_090 Hb_002168_060--Hb_000465_090 Hb_002168_060--Hb_001012_010 Hb_003057_090 Hb_003057_090 Hb_002168_060--Hb_003057_090 Hb_005054_060 Hb_005054_060 Hb_002168_060--Hb_005054_060 Hb_002477_300 Hb_002477_300 Hb_002168_060--Hb_002477_300 Hb_004619_080 Hb_004619_080 Hb_002168_060--Hb_004619_080 Hb_005588_030 Hb_005588_030 Hb_001012_010--Hb_005588_030 Hb_001012_010--Hb_000465_090 Hb_002530_030 Hb_002530_030 Hb_001012_010--Hb_002530_030 Hb_009421_020 Hb_009421_020 Hb_001012_010--Hb_009421_020 Hb_009545_080 Hb_009545_080 Hb_001012_010--Hb_009545_080 Hb_000768_090 Hb_000768_090 Hb_001012_010--Hb_000768_090 Hb_000012_250 Hb_000012_250 Hb_000731_160--Hb_000012_250 Hb_000731_160--Hb_002477_300 Hb_146673_010 Hb_146673_010 Hb_000731_160--Hb_146673_010 Hb_001472_100 Hb_001472_100 Hb_000731_160--Hb_001472_100 Hb_006570_140 Hb_006570_140 Hb_000731_160--Hb_006570_140 Hb_000185_050 Hb_000185_050 Hb_000731_160--Hb_000185_050 Hb_001348_170 Hb_001348_170 Hb_004837_270--Hb_001348_170 Hb_002686_170 Hb_002686_170 Hb_004837_270--Hb_002686_170 Hb_001629_080 Hb_001629_080 Hb_004837_270--Hb_001629_080 Hb_000110_310 Hb_000110_310 Hb_004837_270--Hb_000110_310 Hb_001799_030 Hb_001799_030 Hb_004837_270--Hb_001799_030 Hb_004837_270--Hb_000731_160 Hb_011618_050 Hb_011618_050 Hb_005144_090--Hb_011618_050 Hb_000049_140 Hb_000049_140 Hb_005144_090--Hb_000049_140 Hb_000417_130 Hb_000417_130 Hb_005144_090--Hb_000417_130 Hb_000297_160 Hb_000297_160 Hb_005144_090--Hb_000297_160 Hb_002013_020 Hb_002013_020 Hb_005144_090--Hb_002013_020 Hb_123915_040 Hb_123915_040 Hb_005144_090--Hb_123915_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.922192 0.363632 2.52802 0.888344 1.22762 1.50507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04795 1.51021 1.21699 1.40002 0.808897

CAGE analysis