Hb_029281_010

Information

Type -
Description -
Location Contig29281: 15474-28905
Sequence    

Annotation

kegg
ID rcu:RCOM_0639420
description hypothetical protein
nr
ID KDP38672.1
description hypothetical protein JCGZ_04025 [Jatropha curcas]
swissprot
ID Q9FPS4
description Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana GN=UBP23 PE=2 SV=2
trembl
ID A0A067KRB7
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_04025 PE=3 SV=1
Gene Ontology
ID GO:0008233
description ubiquitin carboxyl-terminal hydrolase 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30717: 15698-28812 , PASA_asmbl_30720: 20467-20884 , PASA_asmbl_30722: 19197-19671
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029281_010 0.0 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
2 Hb_002169_010 0.0497782249 - - PREDICTED: la-related protein 6B [Jatropha curcas]
3 Hb_000490_030 0.0643268719 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
4 Hb_011496_010 0.0678958114 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
5 Hb_005314_010 0.0761846561 - - nucleotide binding protein, putative [Ricinus communis]
6 Hb_001439_180 0.076888076 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
7 Hb_000413_130 0.0824639603 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
8 Hb_002818_040 0.0836238984 - - tRNA synthetase-related family protein [Populus trichocarpa]
9 Hb_160818_010 0.0837110439 - - -
10 Hb_006091_030 0.0886856854 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
11 Hb_002026_110 0.0888997735 - - protein binding protein, putative [Ricinus communis]
12 Hb_001936_050 0.0899938582 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
13 Hb_000340_510 0.090796701 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
14 Hb_000138_040 0.0917826604 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
15 Hb_002377_050 0.0919841492 - - Agmatine deiminase, putative [Ricinus communis]
16 Hb_000001_180 0.0934612196 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
17 Hb_000608_120 0.0947202018 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
18 Hb_000358_080 0.095360247 - - Ribonuclease 3 [Gossypium arboreum]
19 Hb_001431_070 0.0958249539 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
20 Hb_000462_150 0.0971633823 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]

Gene co-expression network

sample Hb_029281_010 Hb_029281_010 Hb_002169_010 Hb_002169_010 Hb_029281_010--Hb_002169_010 Hb_000490_030 Hb_000490_030 Hb_029281_010--Hb_000490_030 Hb_011496_010 Hb_011496_010 Hb_029281_010--Hb_011496_010 Hb_005314_010 Hb_005314_010 Hb_029281_010--Hb_005314_010 Hb_001439_180 Hb_001439_180 Hb_029281_010--Hb_001439_180 Hb_000413_130 Hb_000413_130 Hb_029281_010--Hb_000413_130 Hb_002169_010--Hb_011496_010 Hb_160818_010 Hb_160818_010 Hb_002169_010--Hb_160818_010 Hb_000462_150 Hb_000462_150 Hb_002169_010--Hb_000462_150 Hb_002377_050 Hb_002377_050 Hb_002169_010--Hb_002377_050 Hb_002818_040 Hb_002818_040 Hb_002169_010--Hb_002818_040 Hb_001936_050 Hb_001936_050 Hb_000490_030--Hb_001936_050 Hb_000358_080 Hb_000358_080 Hb_000490_030--Hb_000358_080 Hb_006091_030 Hb_006091_030 Hb_000490_030--Hb_006091_030 Hb_000340_510 Hb_000340_510 Hb_000490_030--Hb_000340_510 Hb_002874_070 Hb_002874_070 Hb_000490_030--Hb_002874_070 Hb_011496_010--Hb_000462_150 Hb_011496_010--Hb_002818_040 Hb_003638_140 Hb_003638_140 Hb_011496_010--Hb_003638_140 Hb_011496_010--Hb_001936_050 Hb_000001_180 Hb_000001_180 Hb_005314_010--Hb_000001_180 Hb_005314_010--Hb_002818_040 Hb_005314_010--Hb_000413_130 Hb_024399_010 Hb_024399_010 Hb_005314_010--Hb_024399_010 Hb_005914_230 Hb_005914_230 Hb_005314_010--Hb_005914_230 Hb_000076_290 Hb_000076_290 Hb_001439_180--Hb_000076_290 Hb_001034_020 Hb_001034_020 Hb_001439_180--Hb_001034_020 Hb_002675_190 Hb_002675_190 Hb_001439_180--Hb_002675_190 Hb_000331_480 Hb_000331_480 Hb_001439_180--Hb_000331_480 Hb_004931_040 Hb_004931_040 Hb_001439_180--Hb_004931_040 Hb_001431_070 Hb_001431_070 Hb_000413_130--Hb_001431_070 Hb_000367_290 Hb_000367_290 Hb_000413_130--Hb_000367_290 Hb_002725_070 Hb_002725_070 Hb_000413_130--Hb_002725_070 Hb_000413_130--Hb_006091_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
871.713 307.162 43.26 71.8633 823.823 838.487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
368.661 307.276 522.546 245.224 74.4654

CAGE analysis