Hb_029385_010

Information

Type -
Description -
Location Contig29385: 14094-22644
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18410g
description POPTRDRAFT_883601; CTP synthase family protein
nr
ID XP_002315098.2
description CTP synthase family protein [Populus trichocarpa]
swissprot
ID O29987
description CTP synthase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=pyrG PE=3 SV=1
trembl
ID B9HYE3
description CTP synthase OS=Populus trichocarpa GN=POPTR_0010s18410g PE=3 SV=2
Gene Ontology
ID GO:0006139
description ctp synthase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30747: 14134-22587
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029385_010 0.0 - - CTP synthase family protein [Populus trichocarpa]
2 Hb_100147_010 0.1102582314 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
3 Hb_001728_140 0.1115671626 - - -
4 Hb_001510_020 0.1120018679 - - Diaminopimelate epimerase, putative [Ricinus communis]
5 Hb_000251_030 0.1140715151 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
6 Hb_001971_060 0.1178643237 - - PREDICTED: 66 kDa stress protein-like [Populus euphratica]
7 Hb_000381_110 0.1221140718 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X2 [Jatropha curcas]
8 Hb_000548_070 0.12757918 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
9 Hb_002783_110 0.1337924498 - - Zeamatin precursor, putative [Ricinus communis]
10 Hb_002477_290 0.1415869661 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
11 Hb_007590_090 0.1444852898 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
12 Hb_001623_160 0.1462275661 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
13 Hb_000270_180 0.1478522428 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
14 Hb_000684_520 0.1492889993 - - glutathione S-transferase L3-like [Jatropha curcas]
15 Hb_002217_100 0.1524099331 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
16 Hb_002232_430 0.1534134343 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
17 Hb_009193_100 0.1546205766 - - hypothetical protein JCGZ_15709 [Jatropha curcas]
18 Hb_024468_010 0.1548680292 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
19 Hb_000215_280 0.1549126204 - - Protein-tyrosine phosphatase mitochondrial 1, mitochondrial precursor, putative [Ricinus communis]
20 Hb_001221_020 0.1550617296 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]

Gene co-expression network

sample Hb_029385_010 Hb_029385_010 Hb_100147_010 Hb_100147_010 Hb_029385_010--Hb_100147_010 Hb_001728_140 Hb_001728_140 Hb_029385_010--Hb_001728_140 Hb_001510_020 Hb_001510_020 Hb_029385_010--Hb_001510_020 Hb_000251_030 Hb_000251_030 Hb_029385_010--Hb_000251_030 Hb_001971_060 Hb_001971_060 Hb_029385_010--Hb_001971_060 Hb_000381_110 Hb_000381_110 Hb_029385_010--Hb_000381_110 Hb_100147_010--Hb_000251_030 Hb_100147_010--Hb_000381_110 Hb_100147_010--Hb_001971_060 Hb_100147_010--Hb_001510_020 Hb_001623_160 Hb_001623_160 Hb_100147_010--Hb_001623_160 Hb_000548_070 Hb_000548_070 Hb_001728_140--Hb_000548_070 Hb_009615_060 Hb_009615_060 Hb_001728_140--Hb_009615_060 Hb_001493_150 Hb_001493_150 Hb_001728_140--Hb_001493_150 Hb_001728_140--Hb_000251_030 Hb_001728_140--Hb_001510_020 Hb_002477_290 Hb_002477_290 Hb_001728_140--Hb_002477_290 Hb_001510_020--Hb_000548_070 Hb_001510_020--Hb_002477_290 Hb_000684_520 Hb_000684_520 Hb_001510_020--Hb_000684_520 Hb_000210_060 Hb_000210_060 Hb_001510_020--Hb_000210_060 Hb_001510_020--Hb_000251_030 Hb_000251_030--Hb_002477_290 Hb_007218_120 Hb_007218_120 Hb_000251_030--Hb_007218_120 Hb_003376_180 Hb_003376_180 Hb_000251_030--Hb_003376_180 Hb_006059_010 Hb_006059_010 Hb_000251_030--Hb_006059_010 Hb_000251_030--Hb_000548_070 Hb_001971_060--Hb_000381_110 Hb_001971_060--Hb_001623_160 Hb_004079_080 Hb_004079_080 Hb_001971_060--Hb_004079_080 Hb_001971_060--Hb_001728_140 Hb_000025_190 Hb_000025_190 Hb_000381_110--Hb_000025_190 Hb_000381_110--Hb_000251_030 Hb_001221_020 Hb_001221_020 Hb_000381_110--Hb_001221_020 Hb_002631_010 Hb_002631_010 Hb_000381_110--Hb_002631_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.58102 2.37383 3.55731 5.12634 0.355947 0.953865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.00964 3.97868 5.62701 8.33354 3.91433

CAGE analysis