Hb_029388_010

Information

Type transcription factor
Description TF Family: C2C2-CO-like
Location Contig29388: 7386-10997
Sequence    

Annotation

kegg
ID rcu:RCOM_1437660
description hypothetical protein
nr
ID XP_012088747.1
description PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
swissprot
ID O22800
description Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2
trembl
ID A0A067JHF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23120 PE=4 SV=1
Gene Ontology
ID GO:0005622
description zinc finger protein constans-like 14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30752: 9142-10651
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029388_010 0.0 transcription factor TF Family: C2C2-CO-like PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
2 Hb_001369_300 0.1034483134 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
3 Hb_011671_310 0.1092882293 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
4 Hb_005977_030 0.1108096863 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
5 Hb_001500_120 0.112551203 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_000120_250 0.1136843763 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
7 Hb_001789_060 0.1142145154 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
8 Hb_000229_050 0.1165279583 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
9 Hb_001357_310 0.1193939142 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
10 Hb_006501_050 0.1194313802 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
11 Hb_001660_100 0.1213641326 - - PREDICTED: glyoxylate reductase/hydroxypyruvate reductase [Jatropha curcas]
12 Hb_000866_310 0.1216065376 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
13 Hb_000402_150 0.1251357825 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
14 Hb_001025_090 0.1255226061 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
15 Hb_011282_050 0.1255755557 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
16 Hb_002326_110 0.1263046493 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
17 Hb_004807_020 0.1268756053 - - PREDICTED: transcription initiation factor TFIID subunit 14b-like [Jatropha curcas]
18 Hb_008114_040 0.127114129 - - Fanconi anemia group D2 [Gossypium arboreum]
19 Hb_010775_030 0.1274805905 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
20 Hb_010931_070 0.1283061336 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_029388_010 Hb_029388_010 Hb_001369_300 Hb_001369_300 Hb_029388_010--Hb_001369_300 Hb_011671_310 Hb_011671_310 Hb_029388_010--Hb_011671_310 Hb_005977_030 Hb_005977_030 Hb_029388_010--Hb_005977_030 Hb_001500_120 Hb_001500_120 Hb_029388_010--Hb_001500_120 Hb_000120_250 Hb_000120_250 Hb_029388_010--Hb_000120_250 Hb_001789_060 Hb_001789_060 Hb_029388_010--Hb_001789_060 Hb_001660_100 Hb_001660_100 Hb_001369_300--Hb_001660_100 Hb_001357_310 Hb_001357_310 Hb_001369_300--Hb_001357_310 Hb_000510_340 Hb_000510_340 Hb_001369_300--Hb_000510_340 Hb_000402_150 Hb_000402_150 Hb_001369_300--Hb_000402_150 Hb_005271_040 Hb_005271_040 Hb_001369_300--Hb_005271_040 Hb_000875_080 Hb_000875_080 Hb_001369_300--Hb_000875_080 Hb_011671_310--Hb_001500_120 Hb_011671_310--Hb_005977_030 Hb_002311_480 Hb_002311_480 Hb_011671_310--Hb_002311_480 Hb_001005_020 Hb_001005_020 Hb_011671_310--Hb_001005_020 Hb_001761_120 Hb_001761_120 Hb_011671_310--Hb_001761_120 Hb_007290_030 Hb_007290_030 Hb_011671_310--Hb_007290_030 Hb_005977_030--Hb_001500_120 Hb_000089_210 Hb_000089_210 Hb_005977_030--Hb_000089_210 Hb_003470_040 Hb_003470_040 Hb_005977_030--Hb_003470_040 Hb_000476_060 Hb_000476_060 Hb_005977_030--Hb_000476_060 Hb_004712_190 Hb_004712_190 Hb_005977_030--Hb_004712_190 Hb_000723_030 Hb_000723_030 Hb_001500_120--Hb_000723_030 Hb_001500_120--Hb_004712_190 Hb_001500_120--Hb_002311_480 Hb_001500_120--Hb_003470_040 Hb_000120_250--Hb_011671_310 Hb_010080_010 Hb_010080_010 Hb_000120_250--Hb_010080_010 Hb_000120_250--Hb_002311_480 Hb_100790_010 Hb_100790_010 Hb_000120_250--Hb_100790_010 Hb_000979_060 Hb_000979_060 Hb_000120_250--Hb_000979_060 Hb_000359_040 Hb_000359_040 Hb_001789_060--Hb_000359_040 Hb_001722_120 Hb_001722_120 Hb_001789_060--Hb_001722_120 Hb_001279_170 Hb_001279_170 Hb_001789_060--Hb_001279_170 Hb_004994_010 Hb_004994_010 Hb_001789_060--Hb_004994_010 Hb_000617_230 Hb_000617_230 Hb_001789_060--Hb_000617_230 Hb_002445_100 Hb_002445_100 Hb_001789_060--Hb_002445_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.35129 5.96724 17.9989 5.49825 4.27686 4.61509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.99696 5.38329 5.93268 9.8636 4.22086

CAGE analysis