Hb_029388_020

Information

Type -
Description -
Location Contig29388: 21927-24224
Sequence    

Annotation

kegg
ID rcu:RCOM_1437770
description hypothetical protein
nr
ID XP_002512639.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RFX0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437770 PE=4 SV=1
Gene Ontology
ID GO:0005622
description lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30753: 21916-24132
cDNA
(Sanger)
(ID:Location)		 031_J19.ab1: 22048-24129 , 038_H13.ab1: 22053-24132 , 044_O23.ab1: 22035-24132

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029388_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000684_380 0.0722497568 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
3 Hb_003125_200 0.0722903878 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
4 Hb_005365_030 0.0731438024 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
5 Hb_002995_020 0.0738115758 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
6 Hb_001691_140 0.0745811387 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
7 Hb_027472_040 0.0754523136 - - SKP1 [Hevea brasiliensis]
8 Hb_000622_180 0.0764547765 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
9 Hb_000905_060 0.0775071865 - - protein with unknown function [Ricinus communis]
10 Hb_000217_030 0.0782433296 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
11 Hb_000667_070 0.080348577 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
12 Hb_004116_190 0.0804162225 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
13 Hb_005846_040 0.0825940604 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
14 Hb_001245_100 0.0854732319 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
15 Hb_001534_120 0.0855335804 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
16 Hb_003787_010 0.0855340224 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
17 Hb_022425_040 0.0857287281 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
18 Hb_015279_010 0.087193438 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
19 Hb_007423_040 0.0876093688 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
20 Hb_021068_040 0.0881945025 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_029388_020 Hb_029388_020 Hb_000684_380 Hb_000684_380 Hb_029388_020--Hb_000684_380 Hb_003125_200 Hb_003125_200 Hb_029388_020--Hb_003125_200 Hb_005365_030 Hb_005365_030 Hb_029388_020--Hb_005365_030 Hb_002995_020 Hb_002995_020 Hb_029388_020--Hb_002995_020 Hb_001691_140 Hb_001691_140 Hb_029388_020--Hb_001691_140 Hb_027472_040 Hb_027472_040 Hb_029388_020--Hb_027472_040 Hb_024958_010 Hb_024958_010 Hb_000684_380--Hb_024958_010 Hb_000589_120 Hb_000589_120 Hb_000684_380--Hb_000589_120 Hb_000768_090 Hb_000768_090 Hb_000684_380--Hb_000768_090 Hb_004058_030 Hb_004058_030 Hb_000684_380--Hb_004058_030 Hb_001359_050 Hb_001359_050 Hb_000684_380--Hb_001359_050 Hb_000331_550 Hb_000331_550 Hb_000684_380--Hb_000331_550 Hb_000465_460 Hb_000465_460 Hb_003125_200--Hb_000465_460 Hb_001758_100 Hb_001758_100 Hb_003125_200--Hb_001758_100 Hb_004931_070 Hb_004931_070 Hb_003125_200--Hb_004931_070 Hb_012389_020 Hb_012389_020 Hb_003125_200--Hb_012389_020 Hb_003125_200--Hb_027472_040 Hb_124953_020 Hb_124953_020 Hb_005365_030--Hb_124953_020 Hb_002078_140 Hb_002078_140 Hb_005365_030--Hb_002078_140 Hb_002320_040 Hb_002320_040 Hb_005365_030--Hb_002320_040 Hb_005365_030--Hb_001691_140 Hb_005365_030--Hb_027472_040 Hb_004116_190 Hb_004116_190 Hb_002995_020--Hb_004116_190 Hb_000020_060 Hb_000020_060 Hb_002995_020--Hb_000020_060 Hb_003787_010 Hb_003787_010 Hb_002995_020--Hb_003787_010 Hb_001633_050 Hb_001633_050 Hb_002995_020--Hb_001633_050 Hb_000656_240 Hb_000656_240 Hb_002995_020--Hb_000656_240 Hb_001123_130 Hb_001123_130 Hb_002995_020--Hb_001123_130 Hb_000099_150 Hb_000099_150 Hb_001691_140--Hb_000099_150 Hb_001691_140--Hb_002078_140 Hb_011671_100 Hb_011671_100 Hb_001691_140--Hb_011671_100 Hb_000217_030 Hb_000217_030 Hb_001691_140--Hb_000217_030 Hb_001863_430 Hb_001863_430 Hb_001691_140--Hb_001863_430 Hb_000610_050 Hb_000610_050 Hb_027472_040--Hb_000610_050 Hb_001504_020 Hb_001504_020 Hb_027472_040--Hb_001504_020 Hb_000457_100 Hb_000457_100 Hb_027472_040--Hb_000457_100 Hb_007576_080 Hb_007576_080 Hb_027472_040--Hb_007576_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.871 45.3576 52.6063 39.7127 44.0495 32.3281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.8015 95.3043 53.1911 48.3762 18.9378

CAGE analysis