Hb_029388_030

Information

Type -
Description -
Location Contig29388: 26320-27967
Sequence    

Annotation

kegg
ID rcu:RCOM_1437780
description hypothetical protein
nr
ID XP_012088745.1
description PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23118 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30754: 26333-27973
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029388_030 0.0 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
2 Hb_003671_020 0.0704586544 - - calcineurin B, putative [Ricinus communis]
3 Hb_000985_060 0.071162251 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
4 Hb_114310_080 0.0745183067 - - conserved hypothetical protein [Ricinus communis]
5 Hb_033594_150 0.0800447657 - - unknown [Lotus japonicus]
6 Hb_000479_190 0.084181374 - - conserved hypothetical protein [Ricinus communis]
7 Hb_152784_010 0.0862942209 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
8 Hb_000102_020 0.0896279929 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
9 Hb_001461_010 0.0910238607 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
10 Hb_003414_050 0.0922845965 - - PREDICTED: uncharacterized protein LOC105640180 isoform X3 [Jatropha curcas]
11 Hb_000638_250 0.0923836547 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_000005_080 0.0925414377 - - PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis]
13 Hb_010174_020 0.0947324304 - - protein binding protein, putative [Ricinus communis]
14 Hb_001519_050 0.0951231041 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
15 Hb_004696_080 0.0958045928 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
16 Hb_010042_010 0.0983831186 - - Urease accessory protein ureD, putative [Ricinus communis]
17 Hb_001842_040 0.0988107232 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
18 Hb_028515_010 0.0993051596 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
19 Hb_158467_010 0.0998347535 - - transporter, putative [Ricinus communis]
20 Hb_009486_020 0.100075284 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_029388_030 Hb_029388_030 Hb_003671_020 Hb_003671_020 Hb_029388_030--Hb_003671_020 Hb_000985_060 Hb_000985_060 Hb_029388_030--Hb_000985_060 Hb_114310_080 Hb_114310_080 Hb_029388_030--Hb_114310_080 Hb_033594_150 Hb_033594_150 Hb_029388_030--Hb_033594_150 Hb_000479_190 Hb_000479_190 Hb_029388_030--Hb_000479_190 Hb_152784_010 Hb_152784_010 Hb_029388_030--Hb_152784_010 Hb_000125_100 Hb_000125_100 Hb_003671_020--Hb_000125_100 Hb_003414_050 Hb_003414_050 Hb_003671_020--Hb_003414_050 Hb_002375_070 Hb_002375_070 Hb_003671_020--Hb_002375_070 Hb_009615_070 Hb_009615_070 Hb_003671_020--Hb_009615_070 Hb_003671_020--Hb_000479_190 Hb_000635_150 Hb_000635_150 Hb_000985_060--Hb_000635_150 Hb_000985_060--Hb_000479_190 Hb_000985_060--Hb_114310_080 Hb_000363_360 Hb_000363_360 Hb_000985_060--Hb_000363_360 Hb_028515_010 Hb_028515_010 Hb_000985_060--Hb_028515_010 Hb_114310_080--Hb_028515_010 Hb_000483_390 Hb_000483_390 Hb_114310_080--Hb_000483_390 Hb_000417_260 Hb_000417_260 Hb_114310_080--Hb_000417_260 Hb_001461_010 Hb_001461_010 Hb_114310_080--Hb_001461_010 Hb_033594_150--Hb_152784_010 Hb_000221_160 Hb_000221_160 Hb_033594_150--Hb_000221_160 Hb_033594_150--Hb_000985_060 Hb_010042_010 Hb_010042_010 Hb_033594_150--Hb_010042_010 Hb_018124_010 Hb_018124_010 Hb_033594_150--Hb_018124_010 Hb_001584_190 Hb_001584_190 Hb_000479_190--Hb_001584_190 Hb_003502_090 Hb_003502_090 Hb_000479_190--Hb_003502_090 Hb_003108_020 Hb_003108_020 Hb_000479_190--Hb_003108_020 Hb_001205_150 Hb_001205_150 Hb_000479_190--Hb_001205_150 Hb_000479_190--Hb_000363_360 Hb_000638_250 Hb_000638_250 Hb_152784_010--Hb_000638_250 Hb_000317_390 Hb_000317_390 Hb_152784_010--Hb_000317_390 Hb_001318_250 Hb_001318_250 Hb_152784_010--Hb_001318_250 Hb_000103_320 Hb_000103_320 Hb_152784_010--Hb_000103_320 Hb_004696_080 Hb_004696_080 Hb_152784_010--Hb_004696_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.86588 7.6792 7.14992 19.4467 11.2842 13.7164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.7386 30.6993 25.7917 9.43412 4.48965

CAGE analysis