Hb_029388_040

Information

Type -
Description -
Location Contig29388: 34657-35750
Sequence    

Annotation

kegg
ID rcu:RCOM_1437790
description hypothetical protein
nr
ID XP_012088743.1
description PREDICTED: GEM-like protein 5 [Jatropha curcas]
swissprot
ID Q9LYV6
description GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1
trembl
ID A0A067JUS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23117 PE=4 SV=1
Gene Ontology
ID GO:0005737
description gem-like protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30755: 34634-35786
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029388_040 0.0 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
2 Hb_002374_440 0.1063434017 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005228_100 0.1172022562 - - -
4 Hb_012340_020 0.1439379742 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
5 Hb_106321_030 0.1492933719 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
6 Hb_000152_560 0.1501235227 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
7 Hb_002168_020 0.1577127678 - - ATP binding protein, putative [Ricinus communis]
8 Hb_029866_130 0.1594554363 - - hypothetical protein JCGZ_00035 [Jatropha curcas]
9 Hb_000739_290 0.1639499673 - - cytochrome P450, putative [Ricinus communis]
10 Hb_010068_030 0.1693949464 - - aconitase, putative [Ricinus communis]
11 Hb_011671_330 0.1716155003 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 4 [Jatropha curcas]
12 Hb_001534_070 0.1746338438 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
13 Hb_004374_050 0.1797803483 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006478_110 0.1814050548 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
15 Hb_003097_190 0.1818395312 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
16 Hb_017711_020 0.1844647978 - - PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]
17 Hb_000753_210 0.1919485566 - - l-asparaginase, putative [Ricinus communis]
18 Hb_005038_020 0.1920560256 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_000771_160 0.1937591763 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
20 Hb_006846_090 0.194307427 - - PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]

Gene co-expression network

sample Hb_029388_040 Hb_029388_040 Hb_002374_440 Hb_002374_440 Hb_029388_040--Hb_002374_440 Hb_005228_100 Hb_005228_100 Hb_029388_040--Hb_005228_100 Hb_012340_020 Hb_012340_020 Hb_029388_040--Hb_012340_020 Hb_106321_030 Hb_106321_030 Hb_029388_040--Hb_106321_030 Hb_000152_560 Hb_000152_560 Hb_029388_040--Hb_000152_560 Hb_002168_020 Hb_002168_020 Hb_029388_040--Hb_002168_020 Hb_002374_440--Hb_005228_100 Hb_002374_440--Hb_012340_020 Hb_004374_050 Hb_004374_050 Hb_002374_440--Hb_004374_050 Hb_001769_020 Hb_001769_020 Hb_002374_440--Hb_001769_020 Hb_003688_200 Hb_003688_200 Hb_002374_440--Hb_003688_200 Hb_000771_160 Hb_000771_160 Hb_005228_100--Hb_000771_160 Hb_011671_330 Hb_011671_330 Hb_005228_100--Hb_011671_330 Hb_005228_100--Hb_004374_050 Hb_000739_290 Hb_000739_290 Hb_005228_100--Hb_000739_290 Hb_001534_070 Hb_001534_070 Hb_012340_020--Hb_001534_070 Hb_000206_130 Hb_000206_130 Hb_012340_020--Hb_000206_130 Hb_010068_030 Hb_010068_030 Hb_012340_020--Hb_010068_030 Hb_002918_310 Hb_002918_310 Hb_012340_020--Hb_002918_310 Hb_012340_020--Hb_003688_200 Hb_002890_030 Hb_002890_030 Hb_106321_030--Hb_002890_030 Hb_003097_190 Hb_003097_190 Hb_106321_030--Hb_003097_190 Hb_106321_030--Hb_010068_030 Hb_106321_030--Hb_000152_560 Hb_029866_130 Hb_029866_130 Hb_106321_030--Hb_029866_130 Hb_000152_560--Hb_003097_190 Hb_000614_080 Hb_000614_080 Hb_000152_560--Hb_000614_080 Hb_000152_890 Hb_000152_890 Hb_000152_560--Hb_000152_890 Hb_000152_560--Hb_010068_030 Hb_000152_560--Hb_029866_130 Hb_001057_010 Hb_001057_010 Hb_000152_560--Hb_001057_010 Hb_002168_020--Hb_012340_020 Hb_002168_020--Hb_010068_030 Hb_002168_020--Hb_001534_070 Hb_000059_040 Hb_000059_040 Hb_002168_020--Hb_000059_040 Hb_002168_020--Hb_005228_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.5014 65.7193 1.55242 5.01022 159.674 76.5124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.7068 23.0412 39.745 12.2611 1.94751

CAGE analysis