Hb_029393_020

Information

Type transcription factor
Description TF Family: Orphans
Location Contig29393: 39266-40881
Sequence    

Annotation

kegg
ID cic:CICLE_v10015305mg
description hypothetical protein
nr
ID XP_012086385.1
description PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
swissprot
ID Q9LJ44
description Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana GN=COL12 PE=2 SV=2
trembl
ID A0A067K0T7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029393_020 0.0 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
2 Hb_000589_130 0.1886618516 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
3 Hb_001251_070 0.2214807081 - - PREDICTED: probable aldo-keto reductase 2, partial [Populus euphratica]
4 Hb_147996_010 0.2439871908 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
5 Hb_006615_040 0.2500413152 - - monoxygenase, putative [Ricinus communis]
6 Hb_000566_190 0.2602840322 - - unnamed protein product [Vitis vinifera]
7 Hb_007253_040 0.2607205014 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
8 Hb_002367_120 0.2626740898 - - -
9 Hb_011861_110 0.2666835486 - - PREDICTED: uncharacterized protein LOC105636580 [Jatropha curcas]
10 Hb_005147_040 0.2684579342 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
11 Hb_004976_060 0.2703228278 - - -
12 Hb_008226_100 0.2719899766 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
13 Hb_020178_050 0.2720917855 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
14 Hb_060909_010 0.272902746 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
15 Hb_000792_060 0.2736715953 - - conserved hypothetical protein [Ricinus communis]
16 Hb_172632_020 0.2790688031 - - -
17 Hb_004976_040 0.2815120492 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
18 Hb_007259_020 0.2826683873 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
19 Hb_000088_160 0.2837809446 - - PREDICTED: uncharacterized protein LOC105629775 [Jatropha curcas]
20 Hb_000940_160 0.2841329119 - - hypothetical protein VITISV_017596 [Vitis vinifera]

Gene co-expression network

sample Hb_029393_020 Hb_029393_020 Hb_000589_130 Hb_000589_130 Hb_029393_020--Hb_000589_130 Hb_001251_070 Hb_001251_070 Hb_029393_020--Hb_001251_070 Hb_147996_010 Hb_147996_010 Hb_029393_020--Hb_147996_010 Hb_006615_040 Hb_006615_040 Hb_029393_020--Hb_006615_040 Hb_000566_190 Hb_000566_190 Hb_029393_020--Hb_000566_190 Hb_007253_040 Hb_007253_040 Hb_029393_020--Hb_007253_040 Hb_000022_180 Hb_000022_180 Hb_000589_130--Hb_000022_180 Hb_004648_100 Hb_004648_100 Hb_000589_130--Hb_004648_100 Hb_005147_040 Hb_005147_040 Hb_000589_130--Hb_005147_040 Hb_060909_010 Hb_060909_010 Hb_000589_130--Hb_060909_010 Hb_000589_130--Hb_001251_070 Hb_000792_060 Hb_000792_060 Hb_001251_070--Hb_000792_060 Hb_001251_070--Hb_007253_040 Hb_010605_010 Hb_010605_010 Hb_001251_070--Hb_010605_010 Hb_000450_180 Hb_000450_180 Hb_001251_070--Hb_000450_180 Hb_000610_020 Hb_000610_020 Hb_147996_010--Hb_000610_020 Hb_010921_090 Hb_010921_090 Hb_147996_010--Hb_010921_090 Hb_001486_140 Hb_001486_140 Hb_147996_010--Hb_001486_140 Hb_002367_120 Hb_002367_120 Hb_147996_010--Hb_002367_120 Hb_147996_010--Hb_006615_040 Hb_004230_060 Hb_004230_060 Hb_006615_040--Hb_004230_060 Hb_004976_040 Hb_004976_040 Hb_006615_040--Hb_004976_040 Hb_006615_040--Hb_005147_040 Hb_001584_010 Hb_001584_010 Hb_006615_040--Hb_001584_010 Hb_004466_070 Hb_004466_070 Hb_006615_040--Hb_004466_070 Hb_000107_440 Hb_000107_440 Hb_006615_040--Hb_000107_440 Hb_006414_020 Hb_006414_020 Hb_000566_190--Hb_006414_020 Hb_002154_020 Hb_002154_020 Hb_000566_190--Hb_002154_020 Hb_000448_060 Hb_000448_060 Hb_000566_190--Hb_000448_060 Hb_000566_190--Hb_000107_440 Hb_001248_110 Hb_001248_110 Hb_000566_190--Hb_001248_110 Hb_012787_040 Hb_012787_040 Hb_000566_190--Hb_012787_040 Hb_000532_130 Hb_000532_130 Hb_007253_040--Hb_000532_130 Hb_007259_020 Hb_007259_020 Hb_007253_040--Hb_007259_020 Hb_008175_030 Hb_008175_030 Hb_007253_040--Hb_008175_030 Hb_007253_040--Hb_060909_010 Hb_008226_100 Hb_008226_100 Hb_007253_040--Hb_008226_100 Hb_007618_010 Hb_007618_010 Hb_007253_040--Hb_007618_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0918885 1.49134 0.492525 0.159002 0 0.744297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0335462 0 0.0989216 0.90674 0.110125

CAGE analysis