Hb_029508_010

Information

Type transcription factor
Description TF Family: HSF
Location Contig29508: 12958-14608
Sequence    

Annotation

kegg
ID rcu:RCOM_0990350
description DNA binding protein, putative
nr
ID XP_002520943.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9LUH8
description Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1
trembl
ID B9S4N6
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0990350 PE=3 SV=1
Gene Ontology
ID GO:0005634
description heat stress transcription factor a-6b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029508_010 0.0 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
2 Hb_168978_040 0.2261564505 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
3 Hb_025194_030 0.2291767821 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
4 Hb_002890_190 0.2311378797 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
5 Hb_005730_100 0.2348876006 - - PREDICTED: 18.2 kDa class I heat shock protein-like [Gossypium raimondii]
6 Hb_085375_010 0.2359130447 - - protein with unknown function [Ricinus communis]
7 Hb_097433_010 0.2389074487 - - PREDICTED: TPR repeat-containing thioredoxin TDX [Jatropha curcas]
8 Hb_007382_020 0.2420827696 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
9 Hb_008749_050 0.2454441951 - - PREDICTED: uncharacterized J domain-containing protein C4H3.01 [Jatropha curcas]
10 Hb_029980_010 0.2467671007 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
11 Hb_004650_080 0.2471773566 - - -
12 Hb_000941_140 0.2482441905 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
13 Hb_010174_210 0.2546310697 - - PREDICTED: small heat shock protein, chloroplastic-like isoform X1 [Jatropha curcas]
14 Hb_000140_370 0.2559932418 - - PREDICTED: BAG family molecular chaperone regulator 6 [Jatropha curcas]
15 Hb_008556_020 0.2637478754 - - -
16 Hb_000345_120 0.2645925723 - - PREDICTED: mediator of RNA polymerase II transcription subunit 37a [Jatropha curcas]
17 Hb_004296_010 0.2712010019 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
18 Hb_002918_310 0.2730131985 - - PREDICTED: dnaJ protein homolog 1-like [Jatropha curcas]
19 Hb_000891_080 0.27514525 - - PREDICTED: TMV resistance protein N-like, partial [Populus euphratica]
20 Hb_001621_160 0.2754485779 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_029508_010 Hb_029508_010 Hb_168978_040 Hb_168978_040 Hb_029508_010--Hb_168978_040 Hb_025194_030 Hb_025194_030 Hb_029508_010--Hb_025194_030 Hb_002890_190 Hb_002890_190 Hb_029508_010--Hb_002890_190 Hb_005730_100 Hb_005730_100 Hb_029508_010--Hb_005730_100 Hb_085375_010 Hb_085375_010 Hb_029508_010--Hb_085375_010 Hb_097433_010 Hb_097433_010 Hb_029508_010--Hb_097433_010 Hb_007382_020 Hb_007382_020 Hb_168978_040--Hb_007382_020 Hb_168978_040--Hb_025194_030 Hb_011515_030 Hb_011515_030 Hb_168978_040--Hb_011515_030 Hb_004650_080 Hb_004650_080 Hb_168978_040--Hb_004650_080 Hb_002983_100 Hb_002983_100 Hb_168978_040--Hb_002983_100 Hb_025194_030--Hb_007382_020 Hb_004846_180 Hb_004846_180 Hb_025194_030--Hb_004846_180 Hb_008749_050 Hb_008749_050 Hb_025194_030--Hb_008749_050 Hb_184326_010 Hb_184326_010 Hb_025194_030--Hb_184326_010 Hb_000140_370 Hb_000140_370 Hb_025194_030--Hb_000140_370 Hb_000853_290 Hb_000853_290 Hb_025194_030--Hb_000853_290 Hb_002890_190--Hb_005730_100 Hb_000891_080 Hb_000891_080 Hb_002890_190--Hb_000891_080 Hb_116436_010 Hb_116436_010 Hb_002890_190--Hb_116436_010 Hb_029980_010 Hb_029980_010 Hb_002890_190--Hb_029980_010 Hb_002890_190--Hb_007382_020 Hb_000107_130 Hb_000107_130 Hb_002890_190--Hb_000107_130 Hb_005730_100--Hb_000891_080 Hb_005730_100--Hb_029980_010 Hb_000488_030 Hb_000488_030 Hb_005730_100--Hb_000488_030 Hb_001104_040 Hb_001104_040 Hb_005730_100--Hb_001104_040 Hb_000398_130 Hb_000398_130 Hb_005730_100--Hb_000398_130 Hb_085375_010--Hb_097433_010 Hb_000008_230 Hb_000008_230 Hb_085375_010--Hb_000008_230 Hb_004712_110 Hb_004712_110 Hb_085375_010--Hb_004712_110 Hb_003125_140 Hb_003125_140 Hb_085375_010--Hb_003125_140 Hb_000206_130 Hb_000206_130 Hb_085375_010--Hb_000206_130 Hb_000580_130 Hb_000580_130 Hb_085375_010--Hb_000580_130 Hb_003327_030 Hb_003327_030 Hb_097433_010--Hb_003327_030 Hb_035947_010 Hb_035947_010 Hb_097433_010--Hb_035947_010 Hb_002918_310 Hb_002918_310 Hb_097433_010--Hb_002918_310 Hb_004635_130 Hb_004635_130 Hb_097433_010--Hb_004635_130 Hb_002814_120 Hb_002814_120 Hb_097433_010--Hb_002814_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.66037 4.31916 0.417393 2.25467 31.5158 1.87978
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.617996 0.411294 0.828581 0.735895 5.22007

CAGE analysis