Hb_029508_020

Information

Type -
Description -
Location Contig29508: 22115-22633
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029508_020 0.0 - - -
2 Hb_000541_030 0.0242070054 - - conserved hypothetical protein [Ricinus communis]
3 Hb_091537_010 0.0906166908 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
4 Hb_000347_210 0.1061327744 - - PREDICTED: uncharacterized protein LOC105631371 [Jatropha curcas]
5 Hb_119808_020 0.1266279056 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
6 Hb_001102_310 0.1461131209 - - Protein AFR, putative [Ricinus communis]
7 Hb_016734_050 0.152715523 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
8 Hb_012799_080 0.1614705934 transcription factor TF Family: MYB Myb domain protein 18, putative [Theobroma cacao]
9 Hb_014508_020 0.170079809 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
10 Hb_003874_030 0.1753168027 - - hypothetical protein JCGZ_00004 [Jatropha curcas]
11 Hb_005914_190 0.1753428067 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
12 Hb_010261_070 0.1754662594 - - hypothetical protein B456_009G094800 [Gossypium raimondii]
13 Hb_049573_010 0.1754720183 - - conserved hypothetical protein [Ricinus communis]
14 Hb_099538_020 0.1755810229 - - hypothetical protein POPTR_0010s12650g [Populus trichocarpa]
15 Hb_178734_010 0.1756937208 - - PREDICTED: uncharacterized protein LOC103331175 [Prunus mume]
16 Hb_002783_290 0.1759160638 - - Uncharacterized protein TCM_034216 [Theobroma cacao]
17 Hb_118730_050 0.1759268997 - - RING/U-box superfamily protein isoform 4 [Theobroma cacao]
18 Hb_002289_160 0.1759950814 - - Polygalacturonase precursor, putative [Ricinus communis]
19 Hb_027136_030 0.176033519 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
20 Hb_149495_010 0.1760788446 - - putative starch phosphorylase, partial [Sorghum bicolor]

Gene co-expression network

sample Hb_029508_020 Hb_029508_020 Hb_000541_030 Hb_000541_030 Hb_029508_020--Hb_000541_030 Hb_091537_010 Hb_091537_010 Hb_029508_020--Hb_091537_010 Hb_000347_210 Hb_000347_210 Hb_029508_020--Hb_000347_210 Hb_119808_020 Hb_119808_020 Hb_029508_020--Hb_119808_020 Hb_001102_310 Hb_001102_310 Hb_029508_020--Hb_001102_310 Hb_016734_050 Hb_016734_050 Hb_029508_020--Hb_016734_050 Hb_000541_030--Hb_091537_010 Hb_000541_030--Hb_000347_210 Hb_000541_030--Hb_119808_020 Hb_000541_030--Hb_016734_050 Hb_014508_020 Hb_014508_020 Hb_000541_030--Hb_014508_020 Hb_091537_010--Hb_001102_310 Hb_091537_010--Hb_000347_210 Hb_091537_010--Hb_119808_020 Hb_003540_180 Hb_003540_180 Hb_091537_010--Hb_003540_180 Hb_012799_080 Hb_012799_080 Hb_000347_210--Hb_012799_080 Hb_000896_070 Hb_000896_070 Hb_000347_210--Hb_000896_070 Hb_000347_210--Hb_119808_020 Hb_001541_220 Hb_001541_220 Hb_119808_020--Hb_001541_220 Hb_013654_030 Hb_013654_030 Hb_119808_020--Hb_013654_030 Hb_000281_050 Hb_000281_050 Hb_119808_020--Hb_000281_050 Hb_002367_030 Hb_002367_030 Hb_001102_310--Hb_002367_030 Hb_001102_310--Hb_003540_180 Hb_001102_310--Hb_000541_030 Hb_017400_010 Hb_017400_010 Hb_001102_310--Hb_017400_010 Hb_015175_060 Hb_015175_060 Hb_016734_050--Hb_015175_060 Hb_016734_050--Hb_012799_080 Hb_056718_010 Hb_056718_010 Hb_016734_050--Hb_056718_010 Hb_001246_080 Hb_001246_080 Hb_016734_050--Hb_001246_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.571919 7.00019 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.484281 0 0 0

CAGE analysis