Hb_029508_050

Information

Type -
Description -
Location Contig29508: 54671-55465
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23910g
description POPTRDRAFT_415985; hypothetical protein
nr
ID XP_009409218.1
description PREDICTED: mechanosensitive ion channel protein 10-like isoform X2 [Musa acuminata subsp. malaccensis]
swissprot
ID -
description -
trembl
ID B9HD23
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s23910g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029508_050 0.0 - - PREDICTED: mechanosensitive ion channel protein 10-like isoform X2 [Musa acuminata subsp. malaccensis]
2 Hb_000358_070 0.059231724 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
3 Hb_000201_060 0.0686766665 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X2 [Populus euphratica]
4 Hb_003607_040 0.0741263779 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
5 Hb_006452_080 0.0765397323 - - Nodulin, putative [Ricinus communis]
6 Hb_003090_250 0.0786733894 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein isoform 1 [Theobroma cacao]
7 Hb_007472_060 0.0810426984 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
8 Hb_000527_090 0.0890486091 - - serine carboxypeptidase, putative [Ricinus communis]
9 Hb_007441_320 0.0920528818 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
10 Hb_000816_170 0.0922779293 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
11 Hb_116679_010 0.0995693769 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
12 Hb_005183_090 0.1004260876 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
13 Hb_006061_020 0.1007327909 transcription factor TF Family: bZIP bZIP family protein [Populus trichocarpa]
14 Hb_103942_020 0.1041437896 - - unknown [Zea mays]
15 Hb_011689_090 0.1044210334 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
16 Hb_000754_010 0.1091276414 - - unnamed protein product [Vitis vinifera]
17 Hb_170597_010 0.1102477635 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
18 Hb_014881_020 0.110675084 - - Protein P21, putative [Ricinus communis]
19 Hb_000012_340 0.1125366648 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
20 Hb_001454_030 0.1138763289 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_029508_050 Hb_029508_050 Hb_000358_070 Hb_000358_070 Hb_029508_050--Hb_000358_070 Hb_000201_060 Hb_000201_060 Hb_029508_050--Hb_000201_060 Hb_003607_040 Hb_003607_040 Hb_029508_050--Hb_003607_040 Hb_006452_080 Hb_006452_080 Hb_029508_050--Hb_006452_080 Hb_003090_250 Hb_003090_250 Hb_029508_050--Hb_003090_250 Hb_007472_060 Hb_007472_060 Hb_029508_050--Hb_007472_060 Hb_000816_170 Hb_000816_170 Hb_000358_070--Hb_000816_170 Hb_000358_070--Hb_000201_060 Hb_000358_070--Hb_003607_040 Hb_000358_070--Hb_003090_250 Hb_006061_020 Hb_006061_020 Hb_000358_070--Hb_006061_020 Hb_000201_060--Hb_003090_250 Hb_000754_010 Hb_000754_010 Hb_000201_060--Hb_000754_010 Hb_000201_060--Hb_006061_020 Hb_000201_060--Hb_006452_080 Hb_002215_020 Hb_002215_020 Hb_003607_040--Hb_002215_020 Hb_116679_010 Hb_116679_010 Hb_003607_040--Hb_116679_010 Hb_000012_340 Hb_000012_340 Hb_003607_040--Hb_000012_340 Hb_003607_040--Hb_000816_170 Hb_000527_090 Hb_000527_090 Hb_006452_080--Hb_000527_090 Hb_006452_080--Hb_003090_250 Hb_170597_010 Hb_170597_010 Hb_006452_080--Hb_170597_010 Hb_011689_090 Hb_011689_090 Hb_006452_080--Hb_011689_090 Hb_006452_080--Hb_116679_010 Hb_003090_250--Hb_000754_010 Hb_003090_250--Hb_006061_020 Hb_007472_060--Hb_000527_090 Hb_007472_060--Hb_011689_090 Hb_007472_060--Hb_116679_010 Hb_007472_060--Hb_006452_080 Hb_007472_060--Hb_003607_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.462675 0.0222725 7.95578 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0216626 0.214685

CAGE analysis