Hb_029510_010

Information

Type -
Description -
Location Contig29510: 47-1221
Sequence    

Annotation

kegg
ID tcc:TCM_028769
description Serine-threonine protein kinase, plant-type, putative
nr
ID XP_012081576.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
swissprot
ID Q9FID6
description Probable receptor-like protein kinase At5g39020 OS=Arabidopsis thaliana GN=At5g39020 PE=2 SV=1
trembl
ID A0A067KDD8
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_18439 PE=3 SV=1
Gene Ontology
ID GO:0000166
description g-type lectin s-receptor-like serine threonine-protein kinase sd2-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029510_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
2 Hb_138600_010 0.1225049476 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
3 Hb_000101_210 0.1834157237 - - PREDICTED: uncharacterized protein LOC105646445 [Jatropha curcas]
4 Hb_088542_010 0.1899475349 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
5 Hb_002232_290 0.1927240791 - - -
6 Hb_000590_080 0.1954625925 - - PREDICTED: metal tolerance protein 11 [Jatropha curcas]
7 Hb_031862_170 0.203700597 - - immunophilin, putative [Ricinus communis]
8 Hb_004102_130 0.2074587406 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000827_080 0.2159995174 - - catalytic, putative [Ricinus communis]
10 Hb_043655_010 0.2172021687 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
11 Hb_001247_140 0.2210271424 - - -
12 Hb_172256_010 0.2227722159 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
13 Hb_000163_280 0.2243360432 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
14 Hb_005052_010 0.2247151634 - - PREDICTED: uncharacterized protein LOC103339315 [Prunus mume]
15 Hb_000211_080 0.2258975601 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_000212_130 0.2262738108 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005122_060 0.2265901865 - - unnamed protein product [Vitis vinifera]
18 Hb_100964_010 0.2271583568 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_005568_070 0.2292244143 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
20 Hb_004206_040 0.2300058232 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_029510_010 Hb_029510_010 Hb_138600_010 Hb_138600_010 Hb_029510_010--Hb_138600_010 Hb_000101_210 Hb_000101_210 Hb_029510_010--Hb_000101_210 Hb_088542_010 Hb_088542_010 Hb_029510_010--Hb_088542_010 Hb_002232_290 Hb_002232_290 Hb_029510_010--Hb_002232_290 Hb_000590_080 Hb_000590_080 Hb_029510_010--Hb_000590_080 Hb_031862_170 Hb_031862_170 Hb_029510_010--Hb_031862_170 Hb_000163_280 Hb_000163_280 Hb_138600_010--Hb_000163_280 Hb_138600_010--Hb_002232_290 Hb_138600_010--Hb_088542_010 Hb_004102_130 Hb_004102_130 Hb_138600_010--Hb_004102_130 Hb_000250_080 Hb_000250_080 Hb_138600_010--Hb_000250_080 Hb_004206_040 Hb_004206_040 Hb_000101_210--Hb_004206_040 Hb_000544_120 Hb_000544_120 Hb_000101_210--Hb_000544_120 Hb_035360_010 Hb_035360_010 Hb_000101_210--Hb_035360_010 Hb_000779_040 Hb_000779_040 Hb_000101_210--Hb_000779_040 Hb_000211_080 Hb_000211_080 Hb_000101_210--Hb_000211_080 Hb_000890_220 Hb_000890_220 Hb_000101_210--Hb_000890_220 Hb_001632_010 Hb_001632_010 Hb_088542_010--Hb_001632_010 Hb_073212_010 Hb_073212_010 Hb_088542_010--Hb_073212_010 Hb_001677_050 Hb_001677_050 Hb_088542_010--Hb_001677_050 Hb_129067_010 Hb_129067_010 Hb_088542_010--Hb_129067_010 Hb_000605_010 Hb_000605_010 Hb_088542_010--Hb_000605_010 Hb_000733_040 Hb_000733_040 Hb_088542_010--Hb_000733_040 Hb_002232_290--Hb_031862_170 Hb_001691_050 Hb_001691_050 Hb_002232_290--Hb_001691_050 Hb_005568_070 Hb_005568_070 Hb_002232_290--Hb_005568_070 Hb_008147_030 Hb_008147_030 Hb_002232_290--Hb_008147_030 Hb_003050_090 Hb_003050_090 Hb_000590_080--Hb_003050_090 Hb_060437_010 Hb_060437_010 Hb_000590_080--Hb_060437_010 Hb_000590_080--Hb_031862_170 Hb_004931_040 Hb_004931_040 Hb_000590_080--Hb_004931_040 Hb_001034_020 Hb_001034_020 Hb_000590_080--Hb_001034_020 Hb_000590_080--Hb_000101_210 Hb_031862_170--Hb_005568_070 Hb_031862_170--Hb_004102_130 Hb_000156_030 Hb_000156_030 Hb_031862_170--Hb_000156_030 Hb_003673_020 Hb_003673_020 Hb_031862_170--Hb_003673_020 Hb_004032_460 Hb_004032_460 Hb_031862_170--Hb_004032_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.14128 2.30046 0.249612 0.54179 7.59165 5.66361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.082419 1.86678 1.72647 0

CAGE analysis