Hb_029510_040

Information

Type -
Description -
Location Contig29510: 14919-18038
Sequence    

Annotation

kegg
ID vvi:100241261
description putative pentatricopeptide repeat-containing protein At3g23330
nr
ID XP_002284545.2
description PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
swissprot
ID Q9LW63
description Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
trembl
ID F6HYE3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04370 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at4g21065-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029510_040 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
2 Hb_000432_050 0.1211598233 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
3 Hb_002756_020 0.1286570977 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
4 Hb_001357_010 0.1322896375 - - -
5 Hb_001189_050 0.1422164981 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
6 Hb_012799_100 0.1445783579 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
7 Hb_000723_190 0.1496441356 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
8 Hb_005839_110 0.1518265283 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]
9 Hb_001894_170 0.1527778328 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
10 Hb_000963_140 0.1562714014 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_005539_240 0.1569710115 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
12 Hb_000771_130 0.1574415123 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
13 Hb_000141_030 0.1576097226 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
14 Hb_000327_220 0.1578006674 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
15 Hb_004429_070 0.1578762081 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
16 Hb_000368_060 0.1600096674 - - thioredoxin H-type 6 [Hevea brasiliensis]
17 Hb_000016_190 0.1612546323 - - ABC transporter B family member 28 [Glycine soja]
18 Hb_000019_060 0.1613509281 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
19 Hb_000454_070 0.1622157996 - - PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis sativus]
20 Hb_019654_090 0.1642290447 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]

Gene co-expression network

sample Hb_029510_040 Hb_029510_040 Hb_000432_050 Hb_000432_050 Hb_029510_040--Hb_000432_050 Hb_002756_020 Hb_002756_020 Hb_029510_040--Hb_002756_020 Hb_001357_010 Hb_001357_010 Hb_029510_040--Hb_001357_010 Hb_001189_050 Hb_001189_050 Hb_029510_040--Hb_001189_050 Hb_012799_100 Hb_012799_100 Hb_029510_040--Hb_012799_100 Hb_000723_190 Hb_000723_190 Hb_029510_040--Hb_000723_190 Hb_001538_140 Hb_001538_140 Hb_000432_050--Hb_001538_140 Hb_005839_110 Hb_005839_110 Hb_000432_050--Hb_005839_110 Hb_000432_050--Hb_002756_020 Hb_009314_010 Hb_009314_010 Hb_000432_050--Hb_009314_010 Hb_000771_130 Hb_000771_130 Hb_000432_050--Hb_000771_130 Hb_004429_070 Hb_004429_070 Hb_002756_020--Hb_004429_070 Hb_002290_040 Hb_002290_040 Hb_002756_020--Hb_002290_040 Hb_000327_220 Hb_000327_220 Hb_002756_020--Hb_000327_220 Hb_006816_450 Hb_006816_450 Hb_002756_020--Hb_006816_450 Hb_005614_050 Hb_005614_050 Hb_002756_020--Hb_005614_050 Hb_003551_050 Hb_003551_050 Hb_002756_020--Hb_003551_050 Hb_001294_010 Hb_001294_010 Hb_001357_010--Hb_001294_010 Hb_001357_010--Hb_001189_050 Hb_092107_010 Hb_092107_010 Hb_001357_010--Hb_092107_010 Hb_011030_020 Hb_011030_020 Hb_001357_010--Hb_011030_020 Hb_005162_070 Hb_005162_070 Hb_001357_010--Hb_005162_070 Hb_001189_050--Hb_011030_020 Hb_000019_060 Hb_000019_060 Hb_001189_050--Hb_000019_060 Hb_001493_180 Hb_001493_180 Hb_001189_050--Hb_001493_180 Hb_010608_050 Hb_010608_050 Hb_001189_050--Hb_010608_050 Hb_025557_030 Hb_025557_030 Hb_001189_050--Hb_025557_030 Hb_002205_130 Hb_002205_130 Hb_012799_100--Hb_002205_130 Hb_012799_100--Hb_000019_060 Hb_012799_100--Hb_011030_020 Hb_012799_100--Hb_001189_050 Hb_003642_050 Hb_003642_050 Hb_012799_100--Hb_003642_050 Hb_168319_030 Hb_168319_030 Hb_012799_100--Hb_168319_030 Hb_001894_170 Hb_001894_170 Hb_000723_190--Hb_001894_170 Hb_002759_240 Hb_002759_240 Hb_000723_190--Hb_002759_240 Hb_002182_090 Hb_002182_090 Hb_000723_190--Hb_002182_090 Hb_005539_240 Hb_005539_240 Hb_000723_190--Hb_005539_240 Hb_000252_130 Hb_000252_130 Hb_000723_190--Hb_000252_130 Hb_000723_190--Hb_000432_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.568188 0.263188 0.0698026 0.118377 0.373297 0.488559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.05257 1.9189 3.58855 0.732145 0.637987

CAGE analysis