Hb_029510_070

Information

Type -
Description -
Location Contig29510: 45908-50686
Sequence    

Annotation

kegg
ID rcu:RCOM_1493350
description Cytochrome c-type biogenesis protein cycL precursor, putative
nr
ID XP_002516012.1
description Cytochrome c-type biogenesis protein cycL precursor, putative [Ricinus communis]
swissprot
ID Q6K7S7
description Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. japonica GN=CCMH PE=2 SV=1
trembl
ID B9RQJ3
description Cytochrome c-type biogenesis protein cycL, putative OS=Ricinus communis GN=RCOM_1493350 PE=4 SV=1
Gene Ontology
ID GO:0005743
description cytochrome c-type biogenesis -like mitochondrial protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30863: 45978-48380 , PASA_asmbl_30864: 45909-47866 , PASA_asmbl_30865: 47916-48135
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029510_070 0.0 - - Cytochrome c-type biogenesis protein cycL precursor, putative [Ricinus communis]
2 Hb_004931_070 0.1135989457 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
3 Hb_002471_150 0.1226739043 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
4 Hb_000465_460 0.1226877201 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
5 Hb_005260_020 0.1260791413 - - PREDICTED: uncharacterized protein LOC105633789 [Jatropha curcas]
6 Hb_003929_250 0.1266393748 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
7 Hb_000012_220 0.1285780874 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000920_180 0.1297542794 - - PREDICTED: F-box protein SKIP5 [Jatropha curcas]
9 Hb_005322_040 0.1306963897 - - 60S ribosomal protein L9, putative [Ricinus communis]
10 Hb_027295_010 0.1314148237 - - 40S ribosomal protein S7, putative [Ricinus communis]
11 Hb_002660_080 0.1324868105 - - 60S ribosomal protein L12A [Hevea brasiliensis]
12 Hb_007590_010 0.1326065648 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_003376_320 0.1328270904 - - 60S ribosomal protein L12A [Hevea brasiliensis]
14 Hb_013405_090 0.1329111014 - - PREDICTED: uncharacterized protein LOC105648433 isoform X1 [Jatropha curcas]
15 Hb_011609_100 0.1330619641 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]
16 Hb_002375_090 0.1336430599 - - -
17 Hb_172632_090 0.1336546752 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
18 Hb_011571_020 0.1336875095 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
19 Hb_002066_070 0.1343514184 - - PREDICTED: uncharacterized protein LOC105631043 [Jatropha curcas]
20 Hb_002759_150 0.1345422764 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 22 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_029510_070 Hb_029510_070 Hb_004931_070 Hb_004931_070 Hb_029510_070--Hb_004931_070 Hb_002471_150 Hb_002471_150 Hb_029510_070--Hb_002471_150 Hb_000465_460 Hb_000465_460 Hb_029510_070--Hb_000465_460 Hb_005260_020 Hb_005260_020 Hb_029510_070--Hb_005260_020 Hb_003929_250 Hb_003929_250 Hb_029510_070--Hb_003929_250 Hb_000012_220 Hb_000012_220 Hb_029510_070--Hb_000012_220 Hb_004931_070--Hb_000465_460 Hb_003125_200 Hb_003125_200 Hb_004931_070--Hb_003125_200 Hb_012389_020 Hb_012389_020 Hb_004931_070--Hb_012389_020 Hb_000421_070 Hb_000421_070 Hb_004931_070--Hb_000421_070 Hb_000317_240 Hb_000317_240 Hb_004931_070--Hb_000317_240 Hb_002530_030 Hb_002530_030 Hb_004931_070--Hb_002530_030 Hb_154826_010 Hb_154826_010 Hb_002471_150--Hb_154826_010 Hb_002375_090 Hb_002375_090 Hb_002471_150--Hb_002375_090 Hb_009793_010 Hb_009793_010 Hb_002471_150--Hb_009793_010 Hb_172632_090 Hb_172632_090 Hb_002471_150--Hb_172632_090 Hb_002043_130 Hb_002043_130 Hb_002471_150--Hb_002043_130 Hb_002226_070 Hb_002226_070 Hb_002471_150--Hb_002226_070 Hb_058999_020 Hb_058999_020 Hb_000465_460--Hb_058999_020 Hb_000465_460--Hb_000317_240 Hb_001242_060 Hb_001242_060 Hb_000465_460--Hb_001242_060 Hb_001758_100 Hb_001758_100 Hb_000465_460--Hb_001758_100 Hb_001157_040 Hb_001157_040 Hb_000465_460--Hb_001157_040 Hb_001430_120 Hb_001430_120 Hb_005260_020--Hb_001430_120 Hb_005333_070 Hb_005333_070 Hb_005260_020--Hb_005333_070 Hb_027295_010 Hb_027295_010 Hb_005260_020--Hb_027295_010 Hb_000205_160 Hb_000205_160 Hb_005260_020--Hb_000205_160 Hb_001489_150 Hb_001489_150 Hb_005260_020--Hb_001489_150 Hb_001358_030 Hb_001358_030 Hb_005260_020--Hb_001358_030 Hb_000340_300 Hb_000340_300 Hb_003929_250--Hb_000340_300 Hb_000920_180 Hb_000920_180 Hb_003929_250--Hb_000920_180 Hb_009557_070 Hb_009557_070 Hb_003929_250--Hb_009557_070 Hb_000056_200 Hb_000056_200 Hb_003929_250--Hb_000056_200 Hb_096563_010 Hb_096563_010 Hb_003929_250--Hb_096563_010 Hb_003929_250--Hb_000465_460 Hb_005322_040 Hb_005322_040 Hb_000012_220--Hb_005322_040 Hb_000127_180 Hb_000127_180 Hb_000012_220--Hb_000127_180 Hb_003528_060 Hb_003528_060 Hb_000012_220--Hb_003528_060 Hb_003050_080 Hb_003050_080 Hb_000012_220--Hb_003050_080 Hb_000487_250 Hb_000487_250 Hb_000012_220--Hb_000487_250 Hb_002868_010 Hb_002868_010 Hb_000012_220--Hb_002868_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.76499 5.23094 6.1216 2.49156 7.94102 13.0179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.93411 17.0659 6.35881 5.86156 2.04314

CAGE analysis