Hb_029510_080

Information

Type -
Description -
Location Contig29510: 56252-56559
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029510_080 0.0 - - -
2 Hb_003057_030 0.0054625068 - - hypothetical protein JCGZ_06668 [Jatropha curcas]
3 Hb_002809_090 0.0205099564 - - -
4 Hb_161728_010 0.0403328397 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
5 Hb_142051_010 0.083321065 - - -
6 Hb_177772_010 0.1091643208 - - PREDICTED: receptor-like protein 12 isoform X2 [Vitis vinifera]
7 Hb_089299_010 0.1186927848 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005207_010 0.1231212782 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Jatropha curcas]
9 Hb_002233_050 0.1345125446 - - PREDICTED: uncharacterized protein LOC104879391 [Vitis vinifera]
10 Hb_003159_070 0.1519067313 - - Uncharacterized protein TCM_035723 [Theobroma cacao]
11 Hb_006415_010 0.1623695261 - - -
12 Hb_000906_120 0.1757270276 - - hypothetical protein VITISV_006406 [Vitis vinifera]
13 Hb_000230_020 0.1912518051 - - cysteine synthase, putative [Ricinus communis]
14 Hb_000649_260 0.193681008 - - uncharacterized LOC105634108 [Jatropha curcas]
15 Hb_002188_050 0.1983382724 - - PREDICTED: serine carboxypeptidase-like 2 [Jatropha curcas]
16 Hb_001534_040 0.2023022152 - - hypothetical protein JCGZ_08436 [Jatropha curcas]
17 Hb_166210_010 0.203374927 - - conserved hypothetical protein [Ricinus communis]
18 Hb_036731_010 0.2082915312 - - -
19 Hb_060822_010 0.2142805536 - - -
20 Hb_000832_340 0.2170893989 - - PREDICTED: psbP-like protein 2, chloroplastic isoform X3 [Nelumbo nucifera]

Gene co-expression network

sample Hb_029510_080 Hb_029510_080 Hb_003057_030 Hb_003057_030 Hb_029510_080--Hb_003057_030 Hb_002809_090 Hb_002809_090 Hb_029510_080--Hb_002809_090 Hb_161728_010 Hb_161728_010 Hb_029510_080--Hb_161728_010 Hb_142051_010 Hb_142051_010 Hb_029510_080--Hb_142051_010 Hb_177772_010 Hb_177772_010 Hb_029510_080--Hb_177772_010 Hb_089299_010 Hb_089299_010 Hb_029510_080--Hb_089299_010 Hb_003057_030--Hb_002809_090 Hb_003057_030--Hb_161728_010 Hb_003057_030--Hb_142051_010 Hb_003057_030--Hb_177772_010 Hb_003057_030--Hb_089299_010 Hb_002809_090--Hb_161728_010 Hb_002809_090--Hb_142051_010 Hb_002809_090--Hb_089299_010 Hb_002809_090--Hb_177772_010 Hb_161728_010--Hb_142051_010 Hb_161728_010--Hb_177772_010 Hb_161728_010--Hb_089299_010 Hb_142051_010--Hb_089299_010 Hb_000906_120 Hb_000906_120 Hb_142051_010--Hb_000906_120 Hb_003159_070 Hb_003159_070 Hb_177772_010--Hb_003159_070 Hb_005207_010 Hb_005207_010 Hb_177772_010--Hb_005207_010 Hb_089299_010--Hb_000906_120 Hb_006415_010 Hb_006415_010 Hb_089299_010--Hb_006415_010 Hb_002188_050 Hb_002188_050 Hb_089299_010--Hb_002188_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.545908 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.01468 0.894294

CAGE analysis