Hb_029510_110

Information

Type -
Description -
Location Contig29510: 65587-67196
Sequence    

Annotation

kegg
ID vvi:100253175
description protein PLANT CADMIUM RESISTANCE 8
nr
ID XP_012073470.1
description PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
swissprot
ID Q9M815
description Protein PLANT CADMIUM RESISTANCE 8 OS=Arabidopsis thaliana GN=PCR8 PE=1 SV=2
trembl
ID D7U0G9
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04180 PE=4 SV=1
Gene Ontology
ID GO:0006820
description protein plant cadmium resistance 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30877: 65896-66670
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029510_110 0.0 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
2 Hb_001104_200 0.0985956472 - - Phytosulfokine 3 precursor, putative [Theobroma cacao]
3 Hb_061195_010 0.1020036956 - - Galactose oxidase precursor, putative [Ricinus communis]
4 Hb_000204_030 0.1044884926 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
5 Hb_000563_610 0.1212770974 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
6 Hb_001366_250 0.1298466333 - - PREDICTED: mannan endo-1,4-beta-mannosidase 4-like [Jatropha curcas]
7 Hb_012239_080 0.1331489749 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
8 Hb_001268_330 0.1401255224 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
9 Hb_173448_010 0.1423586701 - - PREDICTED: galactose oxidase-like [Jatropha curcas]
10 Hb_003428_100 0.1488996347 - - Polygalacturonase precursor, putative [Ricinus communis]
11 Hb_004712_080 0.1560309381 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
12 Hb_000739_130 0.1568324817 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012796_050 0.1580031432 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
14 Hb_000471_080 0.1581882171 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
15 Hb_004445_090 0.1589092528 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004055_180 0.1595017615 - - cell wall invertase [Manihot esculenta]
17 Hb_004195_240 0.164829429 - - Peroxidase 72 precursor, putative [Ricinus communis]
18 Hb_033363_080 0.1652317625 - - Allene oxide cyclase 3, chloroplast precursor, putative [Ricinus communis]
19 Hb_000748_070 0.1664000039 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
20 Hb_000934_170 0.1707380216 - - alcohol dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_029510_110 Hb_029510_110 Hb_001104_200 Hb_001104_200 Hb_029510_110--Hb_001104_200 Hb_061195_010 Hb_061195_010 Hb_029510_110--Hb_061195_010 Hb_000204_030 Hb_000204_030 Hb_029510_110--Hb_000204_030 Hb_000563_610 Hb_000563_610 Hb_029510_110--Hb_000563_610 Hb_001366_250 Hb_001366_250 Hb_029510_110--Hb_001366_250 Hb_012239_080 Hb_012239_080 Hb_029510_110--Hb_012239_080 Hb_001104_200--Hb_000204_030 Hb_000230_230 Hb_000230_230 Hb_001104_200--Hb_000230_230 Hb_000934_170 Hb_000934_170 Hb_001104_200--Hb_000934_170 Hb_001104_200--Hb_000563_610 Hb_000580_070 Hb_000580_070 Hb_001104_200--Hb_000580_070 Hb_173448_010 Hb_173448_010 Hb_061195_010--Hb_173448_010 Hb_061195_010--Hb_012239_080 Hb_004055_180 Hb_004055_180 Hb_061195_010--Hb_004055_180 Hb_004195_240 Hb_004195_240 Hb_061195_010--Hb_004195_240 Hb_148435_010 Hb_148435_010 Hb_061195_010--Hb_148435_010 Hb_002046_100 Hb_002046_100 Hb_000204_030--Hb_002046_100 Hb_000204_030--Hb_000563_610 Hb_004445_090 Hb_004445_090 Hb_000204_030--Hb_004445_090 Hb_003428_100 Hb_003428_100 Hb_000204_030--Hb_003428_100 Hb_000563_610--Hb_004055_180 Hb_000739_130 Hb_000739_130 Hb_000563_610--Hb_000739_130 Hb_000245_140 Hb_000245_140 Hb_000563_610--Hb_000245_140 Hb_097908_010 Hb_097908_010 Hb_000563_610--Hb_097908_010 Hb_012796_050 Hb_012796_050 Hb_000563_610--Hb_012796_050 Hb_004774_060 Hb_004774_060 Hb_000563_610--Hb_004774_060 Hb_005000_310 Hb_005000_310 Hb_001366_250--Hb_005000_310 Hb_001366_250--Hb_004445_090 Hb_007527_020 Hb_007527_020 Hb_001366_250--Hb_007527_020 Hb_000281_200 Hb_000281_200 Hb_001366_250--Hb_000281_200 Hb_001366_250--Hb_000739_130 Hb_033363_080 Hb_033363_080 Hb_012239_080--Hb_033363_080 Hb_012239_080--Hb_004055_180 Hb_004712_080 Hb_004712_080 Hb_012239_080--Hb_004712_080 Hb_012239_080--Hb_004774_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120101 0.310204 0.513663 0.609461 0.0391642 0.0367858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.239088 0.11283 0.0694335 7.91663 0.540343

CAGE analysis