Hb_029510_140

Information

Type -
Description -
Location Contig29510: 79744-86810
Sequence    

Annotation

kegg
ID rcu:RCOM_1493490
description acyl-CoA thioesterase, putative
nr
ID XP_012073387.1
description PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
swissprot
ID Q5R833
description Acyl-coenzyme A thioesterase 13 OS=Pongo abelii GN=ACOT13 PE=2 SV=1
trembl
ID A0A067KQM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06314 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30886: 79912-80781 , PASA_asmbl_30887: 80784-80881
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029510_140 0.0 - - PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
2 Hb_000175_070 0.0595234531 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
3 Hb_007193_100 0.0702066306 - - syntaxin family protein [Populus trichocarpa]
4 Hb_063134_010 0.0720129735 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
5 Hb_001518_040 0.072105899 - - PREDICTED: G patch domain-containing protein 11 [Populus euphratica]
6 Hb_003005_020 0.0758741644 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
7 Hb_010436_070 0.0781751892 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
8 Hb_000317_430 0.0800997195 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
9 Hb_118419_020 0.0816808764 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
10 Hb_000172_370 0.0865643472 - - -
11 Hb_001135_160 0.0873596362 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
12 Hb_000103_140 0.0899789487 - - ribosomal protein S3a [Populus trichocarpa]
13 Hb_000617_020 0.0909994596 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
14 Hb_002616_050 0.091420445 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
15 Hb_000384_090 0.0916062061 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
16 Hb_002112_040 0.0931542938 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
17 Hb_000023_140 0.094041004 - - PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
18 Hb_001771_090 0.0955899321 - - PREDICTED: uncharacterized protein LOC105634551 [Jatropha curcas]
19 Hb_004440_090 0.0979212665 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
20 Hb_060809_010 0.0979218981 - - PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]

Gene co-expression network

sample Hb_029510_140 Hb_029510_140 Hb_000175_070 Hb_000175_070 Hb_029510_140--Hb_000175_070 Hb_007193_100 Hb_007193_100 Hb_029510_140--Hb_007193_100 Hb_063134_010 Hb_063134_010 Hb_029510_140--Hb_063134_010 Hb_001518_040 Hb_001518_040 Hb_029510_140--Hb_001518_040 Hb_003005_020 Hb_003005_020 Hb_029510_140--Hb_003005_020 Hb_010436_070 Hb_010436_070 Hb_029510_140--Hb_010436_070 Hb_000175_070--Hb_007193_100 Hb_000317_430 Hb_000317_430 Hb_000175_070--Hb_000317_430 Hb_118419_020 Hb_118419_020 Hb_000175_070--Hb_118419_020 Hb_006788_070 Hb_006788_070 Hb_000175_070--Hb_006788_070 Hb_009558_020 Hb_009558_020 Hb_000175_070--Hb_009558_020 Hb_007193_100--Hb_063134_010 Hb_007193_100--Hb_000317_430 Hb_007193_100--Hb_118419_020 Hb_001246_100 Hb_001246_100 Hb_007193_100--Hb_001246_100 Hb_063134_010--Hb_003005_020 Hb_063134_010--Hb_000175_070 Hb_000172_370 Hb_000172_370 Hb_063134_010--Hb_000172_370 Hb_000384_090 Hb_000384_090 Hb_063134_010--Hb_000384_090 Hb_001518_040--Hb_000384_090 Hb_000617_020 Hb_000617_020 Hb_001518_040--Hb_000617_020 Hb_060809_010 Hb_060809_010 Hb_001518_040--Hb_060809_010 Hb_001518_040--Hb_003005_020 Hb_003097_150 Hb_003097_150 Hb_001518_040--Hb_003097_150 Hb_004440_090 Hb_004440_090 Hb_003005_020--Hb_004440_090 Hb_003005_020--Hb_000172_370 Hb_003005_020--Hb_000384_090 Hb_000608_030 Hb_000608_030 Hb_003005_020--Hb_000608_030 Hb_148912_010 Hb_148912_010 Hb_003005_020--Hb_148912_010 Hb_000398_180 Hb_000398_180 Hb_003005_020--Hb_000398_180 Hb_125000_010 Hb_125000_010 Hb_010436_070--Hb_125000_010 Hb_010436_070--Hb_118419_020 Hb_000832_140 Hb_000832_140 Hb_010436_070--Hb_000832_140 Hb_009711_030 Hb_009711_030 Hb_010436_070--Hb_009711_030 Hb_002097_110 Hb_002097_110 Hb_010436_070--Hb_002097_110 Hb_010436_070--Hb_000172_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.48077 0.567738 1.28954 2.10547 6.01248 8.54918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.24292 6.1288 4.11955 2.32544 1.78532

CAGE analysis