Hb_029552_020

Information

Type -
Description -
Location Contig29552: 9308-13646
Sequence    

Annotation

kegg
ID rcu:RCOM_1313190
description hypothetical protein
nr
ID XP_002518905.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P09379
description GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2
trembl
ID B9RYT6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1313190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30895: 9481-12089 , PASA_asmbl_30896: 9283-13666 , PASA_asmbl_30897: 9329-13666 , PASA_asmbl_30898: 9329-13666
cDNA
(Sanger)
(ID:Location)		 031_O15.ab1: 9481-11252 , 038_E21.ab1: 9481-11320 , 053_B07.ab1: 9481-11298

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029552_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001140_180 0.0614860627 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
3 Hb_001279_020 0.0716385917 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
4 Hb_005305_130 0.0726048806 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
5 Hb_000529_130 0.0732962061 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
6 Hb_002809_160 0.0751362452 - - PREDICTED: protein FAM63A [Jatropha curcas]
7 Hb_000562_070 0.0760845211 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
8 Hb_003849_160 0.0847766955 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
9 Hb_004994_350 0.0858426171 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
10 Hb_000300_560 0.0873822839 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
11 Hb_001396_020 0.088617628 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
12 Hb_011188_010 0.0886311296 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
13 Hb_009078_020 0.0890111806 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
14 Hb_000482_050 0.0892440994 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
15 Hb_001411_130 0.0905379935 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
16 Hb_002447_050 0.0913187975 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_001414_010 0.0927925753 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
18 Hb_001998_210 0.0937096212 - - unnamed protein product [Coffea canephora]
19 Hb_002828_060 0.093733289 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
20 Hb_001439_070 0.099890742 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_029552_020 Hb_029552_020 Hb_001140_180 Hb_001140_180 Hb_029552_020--Hb_001140_180 Hb_001279_020 Hb_001279_020 Hb_029552_020--Hb_001279_020 Hb_005305_130 Hb_005305_130 Hb_029552_020--Hb_005305_130 Hb_000529_130 Hb_000529_130 Hb_029552_020--Hb_000529_130 Hb_002809_160 Hb_002809_160 Hb_029552_020--Hb_002809_160 Hb_000562_070 Hb_000562_070 Hb_029552_020--Hb_000562_070 Hb_002828_060 Hb_002828_060 Hb_001140_180--Hb_002828_060 Hb_001140_180--Hb_001279_020 Hb_001140_180--Hb_000562_070 Hb_001053_080 Hb_001053_080 Hb_001140_180--Hb_001053_080 Hb_001411_130 Hb_001411_130 Hb_001140_180--Hb_001411_130 Hb_001396_020 Hb_001396_020 Hb_001279_020--Hb_001396_020 Hb_001279_020--Hb_000562_070 Hb_001279_020--Hb_001053_080 Hb_001279_090 Hb_001279_090 Hb_001279_020--Hb_001279_090 Hb_001279_020--Hb_000529_130 Hb_009158_060 Hb_009158_060 Hb_005305_130--Hb_009158_060 Hb_003661_010 Hb_003661_010 Hb_005305_130--Hb_003661_010 Hb_160608_010 Hb_160608_010 Hb_005305_130--Hb_160608_010 Hb_001414_010 Hb_001414_010 Hb_005305_130--Hb_001414_010 Hb_001159_060 Hb_001159_060 Hb_005305_130--Hb_001159_060 Hb_004994_350 Hb_004994_350 Hb_000529_130--Hb_004994_350 Hb_000529_130--Hb_000562_070 Hb_000529_130--Hb_001396_020 Hb_003849_160 Hb_003849_160 Hb_000529_130--Hb_003849_160 Hb_143629_020 Hb_143629_020 Hb_002809_160--Hb_143629_020 Hb_002809_160--Hb_001414_010 Hb_002809_160--Hb_005305_130 Hb_009078_020 Hb_009078_020 Hb_002809_160--Hb_009078_020 Hb_000172_360 Hb_000172_360 Hb_002809_160--Hb_000172_360 Hb_001277_340 Hb_001277_340 Hb_000562_070--Hb_001277_340 Hb_000562_070--Hb_005305_130 Hb_000771_170 Hb_000771_170 Hb_000562_070--Hb_000771_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.47404 26.7953 39.463 29.6604 13.3715 14.3509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.02913 4.54849 6.59864 19.4248 44.3972

CAGE analysis