Hb_029576_070

Information

Type -
Description -
Location Contig29576: 72612-73454
Sequence    

Annotation

kegg
ID rcu:RCOM_1225350
description Mitogen-activated protein kinase kinase kinase, putative (EC:2.7.11.25)
nr
ID XP_002524836.1
description Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
swissprot
ID Q54R82
description Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2
trembl
ID B9SFR7
description Mitogen-activated protein kinase kinase kinase, putative OS=Ricinus communis GN=RCOM_1225350 PE=4 SV=1
Gene Ontology
ID GO:0000166
description mitogen-activated protein kinase kinase kinase a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029576_070 0.0 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
2 Hb_002597_030 0.0838013441 - - -
3 Hb_017549_010 0.1161389302 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
4 Hb_000120_600 0.1162071185 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
5 Hb_001856_130 0.1163243837 - - hypothetical protein CISIN_1g022795mg [Citrus sinensis]
6 Hb_001677_190 0.1174998449 - - ATP-binding cassette transporter, putative [Ricinus communis]
7 Hb_011355_020 0.1290193175 - - extensin, proline-rich protein, putative [Ricinus communis]
8 Hb_087314_010 0.1304830281 - - -
9 Hb_000139_050 0.1311506288 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
10 Hb_001675_350 0.1331638439 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
11 Hb_004157_060 0.1351294629 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Jatropha curcas]
12 Hb_036029_020 0.1353525792 - - PREDICTED: patellin-3-like [Jatropha curcas]
13 Hb_057018_010 0.1413779886 - - hypothetical protein JCGZ_04004 [Jatropha curcas]
14 Hb_030827_080 0.1419241086 - - PREDICTED: uncharacterized protein LOC105648491 [Jatropha curcas]
15 Hb_001417_090 0.1432609002 - - PREDICTED: uncharacterized protein LOC105650625 [Jatropha curcas]
16 Hb_072670_010 0.147007075 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
17 Hb_000010_220 0.1473989379 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
18 Hb_005428_010 0.1480700384 - - cytochrome P450, putative [Ricinus communis]
19 Hb_170632_010 0.1493495533 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
20 Hb_004970_100 0.149794916 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]

Gene co-expression network

sample Hb_029576_070 Hb_029576_070 Hb_002597_030 Hb_002597_030 Hb_029576_070--Hb_002597_030 Hb_017549_010 Hb_017549_010 Hb_029576_070--Hb_017549_010 Hb_000120_600 Hb_000120_600 Hb_029576_070--Hb_000120_600 Hb_001856_130 Hb_001856_130 Hb_029576_070--Hb_001856_130 Hb_001677_190 Hb_001677_190 Hb_029576_070--Hb_001677_190 Hb_011355_020 Hb_011355_020 Hb_029576_070--Hb_011355_020 Hb_002597_030--Hb_017549_010 Hb_002597_030--Hb_001677_190 Hb_002597_030--Hb_000120_600 Hb_002597_030--Hb_001856_130 Hb_036029_020 Hb_036029_020 Hb_002597_030--Hb_036029_020 Hb_001115_100 Hb_001115_100 Hb_017549_010--Hb_001115_100 Hb_017549_010--Hb_000120_600 Hb_004374_170 Hb_004374_170 Hb_017549_010--Hb_004374_170 Hb_002804_070 Hb_002804_070 Hb_017549_010--Hb_002804_070 Hb_000120_600--Hb_001856_130 Hb_000120_600--Hb_002804_070 Hb_001953_010 Hb_001953_010 Hb_000120_600--Hb_001953_010 Hb_000120_600--Hb_004374_170 Hb_004474_070 Hb_004474_070 Hb_000120_600--Hb_004474_070 Hb_153180_010 Hb_153180_010 Hb_001856_130--Hb_153180_010 Hb_001417_090 Hb_001417_090 Hb_001856_130--Hb_001417_090 Hb_120040_010 Hb_120040_010 Hb_001856_130--Hb_120040_010 Hb_001856_130--Hb_001953_010 Hb_000000_320 Hb_000000_320 Hb_001856_130--Hb_000000_320 Hb_001677_190--Hb_001856_130 Hb_001677_190--Hb_000120_600 Hb_001677_190--Hb_011355_020 Hb_001677_190--Hb_036029_020 Hb_002897_030 Hb_002897_030 Hb_011355_020--Hb_002897_030 Hb_006026_020 Hb_006026_020 Hb_011355_020--Hb_006026_020 Hb_004031_050 Hb_004031_050 Hb_011355_020--Hb_004031_050 Hb_001198_180 Hb_001198_180 Hb_011355_020--Hb_001198_180 Hb_005214_050 Hb_005214_050 Hb_011355_020--Hb_005214_050 Hb_000373_260 Hb_000373_260 Hb_011355_020--Hb_000373_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0274116 4.16132 3.96867 11.8454 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0495351 0 0.520393 0.29981

CAGE analysis