Hb_029576_080

Information

Type -
Description -
Location Contig29576: 86223-92702
Sequence    

Annotation

kegg
ID rcu:RCOM_1225960
description Aspartic proteinase precursor, putative (EC:3.4.23.40)
nr
ID XP_002524837.1
description Aspartic proteinase precursor, putative [Ricinus communis]
swissprot
ID O65390
description Aspartic proteinase A1 OS=Arabidopsis thaliana GN=APA1 PE=1 SV=1
trembl
ID B9SFR8
description Aspartic proteinase, putative OS=Ricinus communis GN=RCOM_1225960 PE=3 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30907: 86682-92552
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029576_080 0.0 - - Aspartic proteinase precursor, putative [Ricinus communis]
2 Hb_001660_050 0.0784999329 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Eucalyptus grandis]
3 Hb_010839_010 0.0838758461 - - receptor-kinase, putative [Ricinus communis]
4 Hb_000917_120 0.0908821793 - - conserved hypothetical protein [Ricinus communis]
5 Hb_009659_040 0.1044359969 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER [Populus euphratica]
6 Hb_000011_120 0.1045369251 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
7 Hb_170878_050 0.1053645762 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
8 Hb_029866_110 0.1104159242 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
9 Hb_135554_010 0.1107625032 - - Insulin-degrading enzyme, putative [Ricinus communis]
10 Hb_002622_010 0.1127432155 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
11 Hb_007382_070 0.1137211666 - - PREDICTED: MAPK-interacting and spindle-stabilizing protein-like [Jatropha curcas]
12 Hb_006120_030 0.1197622433 - - -
13 Hb_004128_090 0.1250606435 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
14 Hb_005276_220 0.1271617185 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
15 Hb_000661_230 0.1278781358 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X2 [Jatropha curcas]
16 Hb_003085_080 0.1286709488 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_006970_100 0.132421125 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_009812_010 0.1347317412 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_009627_040 0.1362753129 - - Lipase class 3-related protein, putative [Theobroma cacao]
20 Hb_003767_010 0.1370657712 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]

Gene co-expression network

sample Hb_029576_080 Hb_029576_080 Hb_001660_050 Hb_001660_050 Hb_029576_080--Hb_001660_050 Hb_010839_010 Hb_010839_010 Hb_029576_080--Hb_010839_010 Hb_000917_120 Hb_000917_120 Hb_029576_080--Hb_000917_120 Hb_009659_040 Hb_009659_040 Hb_029576_080--Hb_009659_040 Hb_000011_120 Hb_000011_120 Hb_029576_080--Hb_000011_120 Hb_170878_050 Hb_170878_050 Hb_029576_080--Hb_170878_050 Hb_001660_050--Hb_170878_050 Hb_002622_010 Hb_002622_010 Hb_001660_050--Hb_002622_010 Hb_001660_050--Hb_009659_040 Hb_029866_110 Hb_029866_110 Hb_001660_050--Hb_029866_110 Hb_001660_050--Hb_000917_120 Hb_004128_090 Hb_004128_090 Hb_010839_010--Hb_004128_090 Hb_004010_090 Hb_004010_090 Hb_010839_010--Hb_004010_090 Hb_009812_010 Hb_009812_010 Hb_010839_010--Hb_009812_010 Hb_010839_010--Hb_000011_120 Hb_005116_010 Hb_005116_010 Hb_010839_010--Hb_005116_010 Hb_006120_030 Hb_006120_030 Hb_000917_120--Hb_006120_030 Hb_000917_120--Hb_009659_040 Hb_000597_080 Hb_000597_080 Hb_000917_120--Hb_000597_080 Hb_000917_120--Hb_000011_120 Hb_138606_020 Hb_138606_020 Hb_009659_040--Hb_138606_020 Hb_009659_040--Hb_170878_050 Hb_000840_050 Hb_000840_050 Hb_009659_040--Hb_000840_050 Hb_009659_040--Hb_029866_110 Hb_001329_110 Hb_001329_110 Hb_000011_120--Hb_001329_110 Hb_009627_040 Hb_009627_040 Hb_000011_120--Hb_009627_040 Hb_175758_010 Hb_175758_010 Hb_000011_120--Hb_175758_010 Hb_005211_090 Hb_005211_090 Hb_000011_120--Hb_005211_090 Hb_001318_120 Hb_001318_120 Hb_000011_120--Hb_001318_120 Hb_170878_050--Hb_029866_110 Hb_016637_020 Hb_016637_020 Hb_170878_050--Hb_016637_020 Hb_001819_010 Hb_001819_010 Hb_170878_050--Hb_001819_010 Hb_001634_080 Hb_001634_080 Hb_170878_050--Hb_001634_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0129869 18.6288 10.5996 10.7415 0 0.0242932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0295722 0.0697973 0 48.9475 24.4812

CAGE analysis