Hb_029584_030

Information

Type -
Description -
Location Contig29584: 10736-11053
Sequence    

Annotation

kegg
ID rcu:RCOM_1048070
description hypothetical protein
nr
ID KDP33739.1
description hypothetical protein JCGZ_07310 [Jatropha curcas]
swissprot
ID Q8LPN7
description E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1
trembl
ID A0A067KPM6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07310 PE=4 SV=1
Gene Ontology
ID GO:0046872
description e3 ubiquitin-protein ligase ring1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029584_030 0.0 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
2 Hb_000664_010 0.0139518767 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
3 Hb_150179_010 0.0469926242 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
4 Hb_005665_100 0.0471085822 - - PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica]
5 Hb_011224_030 0.0487057357 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
6 Hb_002471_310 0.0558635346 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
7 Hb_000227_290 0.0593666897 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
8 Hb_002308_040 0.0596130504 - - methyladenine glycosylase family protein [Populus trichocarpa]
9 Hb_005614_060 0.0637665699 - - Uncharacterized protein TCM_019750 [Theobroma cacao]
10 Hb_004225_010 0.0658242767 - - -
11 Hb_001308_010 0.0687561249 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001357_110 0.0697974366 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
13 Hb_004957_010 0.0737957179 - - PREDICTED: probable aquaporin NIP-type [Prunus mume]
14 Hb_005653_050 0.0746147708 - - PREDICTED: CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase [Jatropha curcas]
15 Hb_001557_030 0.0749335274 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
16 Hb_003685_070 0.0801903178 - - RecName: Full=(S)-hydroxynitrile lyase; AltName: Full=(S)-acetone-cyanohydrin lyase; AltName: Full=Oxynitrilase [Hevea brasiliensis]
17 Hb_003754_010 0.0812154044 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
18 Hb_007007_140 0.081837941 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL6 [Jatropha curcas]
19 Hb_018910_010 0.0826627836 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
20 Hb_004693_040 0.0849768774 - - -

Gene co-expression network

sample Hb_029584_030 Hb_029584_030 Hb_000664_010 Hb_000664_010 Hb_029584_030--Hb_000664_010 Hb_150179_010 Hb_150179_010 Hb_029584_030--Hb_150179_010 Hb_005665_100 Hb_005665_100 Hb_029584_030--Hb_005665_100 Hb_011224_030 Hb_011224_030 Hb_029584_030--Hb_011224_030 Hb_002471_310 Hb_002471_310 Hb_029584_030--Hb_002471_310 Hb_000227_290 Hb_000227_290 Hb_029584_030--Hb_000227_290 Hb_000664_010--Hb_005665_100 Hb_000664_010--Hb_002471_310 Hb_000664_010--Hb_011224_030 Hb_002308_040 Hb_002308_040 Hb_000664_010--Hb_002308_040 Hb_000664_010--Hb_150179_010 Hb_150179_010--Hb_011224_030 Hb_001557_030 Hb_001557_030 Hb_150179_010--Hb_001557_030 Hb_007007_140 Hb_007007_140 Hb_150179_010--Hb_007007_140 Hb_003685_070 Hb_003685_070 Hb_150179_010--Hb_003685_070 Hb_018910_010 Hb_018910_010 Hb_005665_100--Hb_018910_010 Hb_000049_190 Hb_000049_190 Hb_005665_100--Hb_000049_190 Hb_005614_060 Hb_005614_060 Hb_005665_100--Hb_005614_060 Hb_005665_100--Hb_002471_310 Hb_005665_100--Hb_002308_040 Hb_011224_030--Hb_002471_310 Hb_011224_030--Hb_002308_040 Hb_011224_030--Hb_007007_140 Hb_002471_310--Hb_002308_040 Hb_004693_040 Hb_004693_040 Hb_002471_310--Hb_004693_040 Hb_024066_020 Hb_024066_020 Hb_002471_310--Hb_024066_020 Hb_001357_110 Hb_001357_110 Hb_000227_290--Hb_001357_110 Hb_000227_290--Hb_000664_010 Hb_000227_290--Hb_005665_100 Hb_000227_290--Hb_005614_060 Hb_001496_150 Hb_001496_150 Hb_000227_290--Hb_001496_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.72277 5.00486 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.814477

CAGE analysis