Hb_029584_050

Information

Type -
Description -
Location Contig29584: 20909-23413
Sequence    

Annotation

kegg
ID rcu:RCOM_1047850
description Pyridoxal phosphate phosphatase PHOSPHO2, putative (EC:3.1.3.75)
nr
ID XP_012076786.1
description PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]
swissprot
ID Q9SU92
description Inorganic pyrophosphatase 3 OS=Arabidopsis thaliana GN=At4g29530 PE=2 SV=1
trembl
ID A0A067KCA3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07308 PE=4 SV=1
Gene Ontology
ID GO:0052731
description inorganic pyrophosphatase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30914: 21051-23403
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029584_050 0.0 - - PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]
2 Hb_000015_040 0.0477929506 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
3 Hb_001439_100 0.081056614 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
4 Hb_006615_020 0.0822734439 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
5 Hb_001653_020 0.0857816444 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
6 Hb_001268_410 0.0882185833 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20 [Jatropha curcas]
7 Hb_000665_050 0.0891865789 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
8 Hb_008173_110 0.0905926636 - - DNA binding protein, putative [Ricinus communis]
9 Hb_000414_130 0.0916137776 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
10 Hb_002000_080 0.093609334 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
11 Hb_004734_040 0.0946430202 - - eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis]
12 Hb_089995_010 0.0959960961 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Eucalyptus grandis]
13 Hb_000958_110 0.0968998369 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
14 Hb_005188_080 0.097919646 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
15 Hb_003050_220 0.0981490488 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
16 Hb_002481_080 0.0990876194 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
17 Hb_000030_030 0.0992273696 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
18 Hb_165928_030 0.1006808075 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008725_230 0.1011023128 - - PREDICTED: CTP synthase [Jatropha curcas]
20 Hb_002232_410 0.1016599985 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]

Gene co-expression network

sample Hb_029584_050 Hb_029584_050 Hb_000015_040 Hb_000015_040 Hb_029584_050--Hb_000015_040 Hb_001439_100 Hb_001439_100 Hb_029584_050--Hb_001439_100 Hb_006615_020 Hb_006615_020 Hb_029584_050--Hb_006615_020 Hb_001653_020 Hb_001653_020 Hb_029584_050--Hb_001653_020 Hb_001268_410 Hb_001268_410 Hb_029584_050--Hb_001268_410 Hb_000665_050 Hb_000665_050 Hb_029584_050--Hb_000665_050 Hb_001579_220 Hb_001579_220 Hb_000015_040--Hb_001579_220 Hb_003050_220 Hb_003050_220 Hb_000015_040--Hb_003050_220 Hb_000015_040--Hb_006615_020 Hb_002000_080 Hb_002000_080 Hb_000015_040--Hb_002000_080 Hb_003761_010 Hb_003761_010 Hb_000015_040--Hb_003761_010 Hb_005054_290 Hb_005054_290 Hb_001439_100--Hb_005054_290 Hb_000329_630 Hb_000329_630 Hb_001439_100--Hb_000329_630 Hb_001439_100--Hb_000015_040 Hb_000000_460 Hb_000000_460 Hb_001439_100--Hb_000000_460 Hb_000230_270 Hb_000230_270 Hb_001439_100--Hb_000230_270 Hb_001902_140 Hb_001902_140 Hb_006615_020--Hb_001902_140 Hb_000185_030 Hb_000185_030 Hb_006615_020--Hb_000185_030 Hb_000840_250 Hb_000840_250 Hb_006615_020--Hb_000840_250 Hb_001507_040 Hb_001507_040 Hb_006615_020--Hb_001507_040 Hb_001633_210 Hb_001633_210 Hb_006615_020--Hb_001633_210 Hb_002061_040 Hb_002061_040 Hb_001653_020--Hb_002061_040 Hb_000414_130 Hb_000414_130 Hb_001653_020--Hb_000414_130 Hb_008173_110 Hb_008173_110 Hb_001653_020--Hb_008173_110 Hb_003787_010 Hb_003787_010 Hb_001653_020--Hb_003787_010 Hb_001215_040 Hb_001215_040 Hb_001653_020--Hb_001215_040 Hb_003918_010 Hb_003918_010 Hb_001653_020--Hb_003918_010 Hb_002400_410 Hb_002400_410 Hb_001268_410--Hb_002400_410 Hb_119530_010 Hb_119530_010 Hb_001268_410--Hb_119530_010 Hb_000327_180 Hb_000327_180 Hb_001268_410--Hb_000327_180 Hb_005396_150 Hb_005396_150 Hb_001268_410--Hb_005396_150 Hb_000917_230 Hb_000917_230 Hb_001268_410--Hb_000917_230 Hb_005306_180 Hb_005306_180 Hb_000665_050--Hb_005306_180 Hb_001218_030 Hb_001218_030 Hb_000665_050--Hb_001218_030 Hb_000665_050--Hb_000414_130 Hb_001301_110 Hb_001301_110 Hb_000665_050--Hb_001301_110 Hb_000460_030 Hb_000460_030 Hb_000665_050--Hb_000460_030 Hb_000853_150 Hb_000853_150 Hb_000665_050--Hb_000853_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.15968 5.81168 3.5709 5.95177 3.65282 5.3814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9969 7.14148 7.47317 9.22082 4.68484

CAGE analysis