Hb_029584_060

Information

Type -
Description -
Location Contig29584: 24606-27841
Sequence    

Annotation

kegg
ID rcu:RCOM_1047840
description Grave disease carrier protein, putative
nr
ID XP_002514152.1
description Grave disease carrier protein, putative [Ricinus communis]
swissprot
ID O04619
description Mitochondrial adenine nucleotide transporter ADNT1 OS=Arabidopsis thaliana GN=ADNT1 PE=2 SV=1
trembl
ID B9RKA8
description Grave disease carrier protein, putative OS=Ricinus communis GN=RCOM_1047840 PE=3 SV=1
Gene Ontology
ID GO:0005743
description grave disease carrier

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30915: 24592-26359 , PASA_asmbl_30916: 26470-27215 , PASA_asmbl_30917: 27272-27840
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029584_060 0.0 - - Grave disease carrier protein, putative [Ricinus communis]
2 Hb_002431_050 0.0661778619 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
3 Hb_002830_020 0.0740270789 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_000120_750 0.0747187857 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
5 Hb_000201_120 0.0786290279 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
6 Hb_007416_020 0.0810952827 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
7 Hb_001080_080 0.0823278376 - - small nuclear ribonucleoprotein, putative [Ricinus communis]
8 Hb_000334_210 0.0857731705 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
9 Hb_010672_060 0.0879333305 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
10 Hb_002027_210 0.0888861277 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
11 Hb_033594_110 0.0934083788 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
12 Hb_003126_090 0.0945028987 - - Rop1 [Hevea brasiliensis]
13 Hb_001016_030 0.0946793139 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
14 Hb_032202_090 0.094722936 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
15 Hb_003683_110 0.094975717 - - JHL10I11.3 [Jatropha curcas]
16 Hb_005211_190 0.0951757369 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
17 Hb_004317_040 0.0958013573 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
18 Hb_011781_030 0.0961236173 - - Frataxin, mitochondrial precursor, putative [Ricinus communis]
19 Hb_009421_040 0.0961873627 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
20 Hb_003125_150 0.0970412394 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]

Gene co-expression network

sample Hb_029584_060 Hb_029584_060 Hb_002431_050 Hb_002431_050 Hb_029584_060--Hb_002431_050 Hb_002830_020 Hb_002830_020 Hb_029584_060--Hb_002830_020 Hb_000120_750 Hb_000120_750 Hb_029584_060--Hb_000120_750 Hb_000201_120 Hb_000201_120 Hb_029584_060--Hb_000201_120 Hb_007416_020 Hb_007416_020 Hb_029584_060--Hb_007416_020 Hb_001080_080 Hb_001080_080 Hb_029584_060--Hb_001080_080 Hb_010672_060 Hb_010672_060 Hb_002431_050--Hb_010672_060 Hb_002431_050--Hb_002830_020 Hb_003893_050 Hb_003893_050 Hb_002431_050--Hb_003893_050 Hb_000283_110 Hb_000283_110 Hb_002431_050--Hb_000283_110 Hb_002431_050--Hb_007416_020 Hb_012022_120 Hb_012022_120 Hb_002830_020--Hb_012022_120 Hb_002864_050 Hb_002864_050 Hb_002830_020--Hb_002864_050 Hb_002830_020--Hb_000201_120 Hb_094608_010 Hb_094608_010 Hb_002830_020--Hb_094608_010 Hb_003581_150 Hb_003581_150 Hb_002830_020--Hb_003581_150 Hb_004108_230 Hb_004108_230 Hb_000120_750--Hb_004108_230 Hb_004837_140 Hb_004837_140 Hb_000120_750--Hb_004837_140 Hb_007479_020 Hb_007479_020 Hb_000120_750--Hb_007479_020 Hb_001383_060 Hb_001383_060 Hb_000120_750--Hb_001383_060 Hb_000317_340 Hb_000317_340 Hb_000120_750--Hb_000317_340 Hb_004204_120 Hb_004204_120 Hb_000120_750--Hb_004204_120 Hb_000201_120--Hb_003581_150 Hb_001016_030 Hb_001016_030 Hb_000201_120--Hb_001016_030 Hb_001616_040 Hb_001616_040 Hb_000201_120--Hb_001616_040 Hb_000840_030 Hb_000840_030 Hb_000201_120--Hb_000840_030 Hb_000574_480 Hb_000574_480 Hb_000201_120--Hb_000574_480 Hb_007416_020--Hb_010672_060 Hb_007416_020--Hb_001080_080 Hb_000365_080 Hb_000365_080 Hb_007416_020--Hb_000365_080 Hb_003226_210 Hb_003226_210 Hb_007416_020--Hb_003226_210 Hb_144598_020 Hb_144598_020 Hb_001080_080--Hb_144598_020 Hb_000221_150 Hb_000221_150 Hb_001080_080--Hb_000221_150 Hb_000028_400 Hb_000028_400 Hb_001080_080--Hb_000028_400 Hb_001045_080 Hb_001045_080 Hb_001080_080--Hb_001045_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.38158 3.3279 4.66859 6.37981 8.00056 8.68482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0222 23.4063 10.4696 3.10298 5.22365

CAGE analysis