Hb_029584_080

Information

Type -
Description -
Location Contig29584: 32675-34110
Sequence    

Annotation

kegg
ID pop:POPTR_0013s11380g
description serine acetyltransferase family protein
nr
ID AIS36113.1
description serine acetyltransferase [Hevea brasiliensis]
swissprot
ID Q42538
description Serine acetyltransferase 5 OS=Arabidopsis thaliana GN=SAT5 PE=1 SV=1
trembl
ID A0A0B4PKR8
description Serine acetyltransferase OS=Hevea brasiliensis GN=SAT1 PE=2 SV=1
Gene Ontology
ID GO:0005829
description serine acetyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30921: 32740-33829
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029584_080 0.0 - - serine acetyltransferase [Hevea brasiliensis]
2 Hb_015941_030 0.0634580604 - - unknown [Populus trichocarpa]
3 Hb_000009_550 0.0702173818 - - hypothetical protein RCOM_0603640 [Ricinus communis]
4 Hb_000808_040 0.0880681256 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
5 Hb_002232_170 0.0904451765 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
6 Hb_000008_330 0.0924204461 - - 60S ribosomal protein L12A [Hevea brasiliensis]
7 Hb_086639_070 0.0931594309 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
8 Hb_010710_110 0.0943188606 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
9 Hb_000923_020 0.0964380326 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
10 Hb_001655_070 0.0970331683 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
11 Hb_000645_150 0.0973892141 - - zinc finger protein, putative [Ricinus communis]
12 Hb_008406_160 0.0986374268 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
13 Hb_015978_060 0.100457888 - - unnamed protein product [Vitis vinifera]
14 Hb_001829_010 0.100538793 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
15 Hb_070739_010 0.104377234 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
16 Hb_002475_160 0.1059825392 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
17 Hb_002408_010 0.1065953316 - - cation-transporting atpase plant, putative [Ricinus communis]
18 Hb_000236_370 0.1090347693 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
19 Hb_002097_090 0.1092308602 - - Splicing factor 3A subunit, putative [Ricinus communis]
20 Hb_000109_160 0.1101778563 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]

Gene co-expression network

sample Hb_029584_080 Hb_029584_080 Hb_015941_030 Hb_015941_030 Hb_029584_080--Hb_015941_030 Hb_000009_550 Hb_000009_550 Hb_029584_080--Hb_000009_550 Hb_000808_040 Hb_000808_040 Hb_029584_080--Hb_000808_040 Hb_002232_170 Hb_002232_170 Hb_029584_080--Hb_002232_170 Hb_000008_330 Hb_000008_330 Hb_029584_080--Hb_000008_330 Hb_086639_070 Hb_086639_070 Hb_029584_080--Hb_086639_070 Hb_015941_030--Hb_000808_040 Hb_015941_030--Hb_002232_170 Hb_000116_110 Hb_000116_110 Hb_015941_030--Hb_000116_110 Hb_008406_160 Hb_008406_160 Hb_015941_030--Hb_008406_160 Hb_002475_160 Hb_002475_160 Hb_015941_030--Hb_002475_160 Hb_010710_110 Hb_010710_110 Hb_000009_550--Hb_010710_110 Hb_000923_020 Hb_000923_020 Hb_000009_550--Hb_000923_020 Hb_005307_030 Hb_005307_030 Hb_000009_550--Hb_005307_030 Hb_003097_150 Hb_003097_150 Hb_000009_550--Hb_003097_150 Hb_000009_550--Hb_015941_030 Hb_070739_010 Hb_070739_010 Hb_000808_040--Hb_070739_010 Hb_000808_040--Hb_086639_070 Hb_000808_040--Hb_008406_160 Hb_000465_430 Hb_000465_430 Hb_000808_040--Hb_000465_430 Hb_003994_180 Hb_003994_180 Hb_000808_040--Hb_003994_180 Hb_007101_100 Hb_007101_100 Hb_002232_170--Hb_007101_100 Hb_000997_060 Hb_000997_060 Hb_002232_170--Hb_000997_060 Hb_000169_010 Hb_000169_010 Hb_002232_170--Hb_000169_010 Hb_002374_160 Hb_002374_160 Hb_002232_170--Hb_002374_160 Hb_002232_170--Hb_000808_040 Hb_142439_010 Hb_142439_010 Hb_000008_330--Hb_142439_010 Hb_004724_320 Hb_004724_320 Hb_000008_330--Hb_004724_320 Hb_001047_100 Hb_001047_100 Hb_000008_330--Hb_001047_100 Hb_000861_070 Hb_000861_070 Hb_000008_330--Hb_000861_070 Hb_075481_030 Hb_075481_030 Hb_000008_330--Hb_075481_030 Hb_105386_010 Hb_105386_010 Hb_000008_330--Hb_105386_010 Hb_000661_250 Hb_000661_250 Hb_086639_070--Hb_000661_250 Hb_000000_160 Hb_000000_160 Hb_086639_070--Hb_000000_160 Hb_086639_070--Hb_070739_010 Hb_001259_090 Hb_001259_090 Hb_086639_070--Hb_001259_090 Hb_007919_060 Hb_007919_060 Hb_086639_070--Hb_007919_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
106.682 96.7575 18.3273 44.1895 141.519 143.401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
128.626 111.251 50.7809 44.7295 26.8098

CAGE analysis