Hb_029584_100

Information

Type -
Description -
Location Contig29584: 48303-53305
Sequence    

Annotation

kegg
ID vvi:100242296
description probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial
nr
ID KHG00190.1
description Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Gossypium arboreum]
swissprot
ID Q9SU91
description Probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial OS=Arabidopsis thaliana GN=LPXA PE=1 SV=1
trembl
ID A0A0B0MHB6
description Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Gossypium arboreum GN=F383_18883 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30924: 48697-49015 , PASA_asmbl_30925: 52814-53279
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029584_100 0.0 - - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Gossypium arboreum]
2 Hb_009535_030 0.0851590989 - - CP2 [Hevea brasiliensis]
3 Hb_001247_270 0.0883564898 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
4 Hb_007229_050 0.0963102436 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
5 Hb_019654_110 0.105702068 - - PREDICTED: F-box protein SKIP23-like [Jatropha curcas]
6 Hb_001235_130 0.1212598091 - - -
7 Hb_098533_010 0.1218680813 - - hypothetical protein L484_003492 [Morus notabilis]
8 Hb_003030_010 0.1225498765 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
9 Hb_004030_060 0.1244734093 - - receptor protein kinase zmpk1, putative [Ricinus communis]
10 Hb_003006_080 0.1264467545 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X1 [Jatropha curcas]
11 Hb_000261_310 0.1275967337 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
12 Hb_000157_140 0.1292440128 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
13 Hb_005588_120 0.1325282028 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001054_090 0.1330153715 - - Potassium channel SKOR, putative [Ricinus communis]
15 Hb_004129_010 0.1338880221 - - aspartate aminotransferase, putative [Ricinus communis]
16 Hb_000416_060 0.1353335532 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
17 Hb_002151_100 0.1357431817 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
18 Hb_011174_080 0.1361985509 - - PREDICTED: sulfite oxidase [Jatropha curcas]
19 Hb_187959_010 0.1386479116 - - hypothetical protein JCGZ_12266 [Jatropha curcas]
20 Hb_006185_030 0.1387503318 - - threonine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_029584_100 Hb_029584_100 Hb_009535_030 Hb_009535_030 Hb_029584_100--Hb_009535_030 Hb_001247_270 Hb_001247_270 Hb_029584_100--Hb_001247_270 Hb_007229_050 Hb_007229_050 Hb_029584_100--Hb_007229_050 Hb_019654_110 Hb_019654_110 Hb_029584_100--Hb_019654_110 Hb_001235_130 Hb_001235_130 Hb_029584_100--Hb_001235_130 Hb_098533_010 Hb_098533_010 Hb_029584_100--Hb_098533_010 Hb_004030_060 Hb_004030_060 Hb_009535_030--Hb_004030_060 Hb_009535_030--Hb_001235_130 Hb_009535_030--Hb_001247_270 Hb_009535_030--Hb_007229_050 Hb_001473_170 Hb_001473_170 Hb_009535_030--Hb_001473_170 Hb_000959_120 Hb_000959_120 Hb_001247_270--Hb_000959_120 Hb_003006_080 Hb_003006_080 Hb_001247_270--Hb_003006_080 Hb_004522_030 Hb_004522_030 Hb_001247_270--Hb_004522_030 Hb_073808_010 Hb_073808_010 Hb_001247_270--Hb_073808_010 Hb_006185_030 Hb_006185_030 Hb_007229_050--Hb_006185_030 Hb_004129_010 Hb_004129_010 Hb_007229_050--Hb_004129_010 Hb_007229_050--Hb_001235_130 Hb_007229_050--Hb_098533_010 Hb_000157_140 Hb_000157_140 Hb_007229_050--Hb_000157_140 Hb_000256_160 Hb_000256_160 Hb_007229_050--Hb_000256_160 Hb_000416_060 Hb_000416_060 Hb_019654_110--Hb_000416_060 Hb_019654_110--Hb_003006_080 Hb_002151_100 Hb_002151_100 Hb_019654_110--Hb_002151_100 Hb_005588_120 Hb_005588_120 Hb_019654_110--Hb_005588_120 Hb_019654_110--Hb_001235_130 Hb_011174_080 Hb_011174_080 Hb_001235_130--Hb_011174_080 Hb_001235_130--Hb_000256_160 Hb_005854_040 Hb_005854_040 Hb_001235_130--Hb_005854_040 Hb_001235_130--Hb_005588_120 Hb_009803_020 Hb_009803_020 Hb_098533_010--Hb_009803_020 Hb_007317_020 Hb_007317_020 Hb_098533_010--Hb_007317_020 Hb_098533_010--Hb_006185_030 Hb_098533_010--Hb_001473_170 Hb_098533_010--Hb_009535_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.12241 0.839895 0.510564 1.48708 0.119274 0.0914286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.2396 0.219888 0.11695 1.25804 1.10598

CAGE analysis