Hb_029584_130

Information

Type -
Description -
Location Contig29584: 80026-81623
Sequence    

Annotation

kegg
ID rcu:RCOM_1047750
description hypothetical protein
nr
ID XP_012076905.1
description PREDICTED: uncharacterized protein LOC105637865 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KFQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07389 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029584_130 0.0 - - PREDICTED: uncharacterized protein LOC105637865 [Jatropha curcas]
2 Hb_001159_100 0.0651471468 - - PREDICTED: pentatricopeptide repeat-containing protein At4g22760 [Jatropha curcas]
3 Hb_000007_150 0.0690216408 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
4 Hb_034585_060 0.0711970589 - - PREDICTED: pentatricopeptide repeat-containing protein At3g50420 [Jatropha curcas]
5 Hb_000297_200 0.0741874768 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
6 Hb_000754_060 0.0750590427 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
7 Hb_000427_050 0.0810243726 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_006922_110 0.0817205242 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
9 Hb_001085_170 0.0850175485 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
10 Hb_000406_220 0.0870761683 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
11 Hb_000022_250 0.0885835176 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
12 Hb_000175_450 0.0899835861 - - PREDICTED: pentatricopeptide repeat-containing protein At1g52620 [Jatropha curcas]
13 Hb_007951_050 0.090166942 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000934_270 0.0928482128 - - PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Populus euphratica]
15 Hb_000457_150 0.0943894984 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
16 Hb_004837_040 0.0949709176 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
17 Hb_000190_140 0.0974495522 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
18 Hb_002496_030 0.0980791916 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
19 Hb_002154_030 0.0984022831 - - RNA binding protein, putative [Ricinus communis]
20 Hb_000554_020 0.0984622315 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]

Gene co-expression network

sample Hb_029584_130 Hb_029584_130 Hb_001159_100 Hb_001159_100 Hb_029584_130--Hb_001159_100 Hb_000007_150 Hb_000007_150 Hb_029584_130--Hb_000007_150 Hb_034585_060 Hb_034585_060 Hb_029584_130--Hb_034585_060 Hb_000297_200 Hb_000297_200 Hb_029584_130--Hb_000297_200 Hb_000754_060 Hb_000754_060 Hb_029584_130--Hb_000754_060 Hb_000427_050 Hb_000427_050 Hb_029584_130--Hb_000427_050 Hb_007951_050 Hb_007951_050 Hb_001159_100--Hb_007951_050 Hb_000776_110 Hb_000776_110 Hb_001159_100--Hb_000776_110 Hb_002496_030 Hb_002496_030 Hb_001159_100--Hb_002496_030 Hb_001159_100--Hb_000427_050 Hb_000022_250 Hb_000022_250 Hb_001159_100--Hb_000022_250 Hb_000019_130 Hb_000019_130 Hb_000007_150--Hb_000019_130 Hb_000000_250 Hb_000000_250 Hb_000007_150--Hb_000000_250 Hb_000007_150--Hb_034585_060 Hb_000007_150--Hb_000297_200 Hb_000007_150--Hb_000427_050 Hb_034585_060--Hb_000022_250 Hb_034585_060--Hb_000000_250 Hb_034585_060--Hb_001159_100 Hb_002678_020 Hb_002678_020 Hb_034585_060--Hb_002678_020 Hb_000997_400 Hb_000997_400 Hb_000297_200--Hb_000997_400 Hb_000457_150 Hb_000457_150 Hb_000297_200--Hb_000457_150 Hb_000935_050 Hb_000935_050 Hb_000297_200--Hb_000935_050 Hb_000059_220 Hb_000059_220 Hb_000297_200--Hb_000059_220 Hb_000190_140 Hb_000190_140 Hb_000754_060--Hb_000190_140 Hb_000120_950 Hb_000120_950 Hb_000754_060--Hb_000120_950 Hb_002477_160 Hb_002477_160 Hb_000754_060--Hb_002477_160 Hb_000754_060--Hb_007951_050 Hb_010381_070 Hb_010381_070 Hb_000754_060--Hb_010381_070 Hb_000554_020 Hb_000554_020 Hb_000754_060--Hb_000554_020 Hb_000427_050--Hb_002678_020 Hb_001266_060 Hb_001266_060 Hb_000427_050--Hb_001266_060 Hb_004452_010 Hb_004452_010 Hb_000427_050--Hb_004452_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.39227 2.02225 0.742744 1.12536 2.00474 3.89877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.00327 2.80729 5.08888 1.47446 0.824213

CAGE analysis