Hb_029584_140

Information

Type -
Description -
Location Contig29584: 82538-84072
Sequence    

Annotation

kegg
ID pop:POPTR_0006s15490g
description POPTRDRAFT_653303; senescence-associated family protein
nr
ID XP_002308295.1
description senescence-associated family protein [Populus trichocarpa]
swissprot
ID Q9ZUN5
description Tetraspanin-2 OS=Arabidopsis thaliana GN=TET2 PE=2 SV=1
trembl
ID A9PAZ7
description Senescence-associated family protein OS=Populus trichocarpa GN=POPTR_0006s15490g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029584_140 0.0 - - senescence-associated family protein [Populus trichocarpa]
2 Hb_003540_230 0.0919228014 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
3 Hb_003038_180 0.0994007732 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
4 Hb_012799_060 0.0994735242 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
5 Hb_000580_170 0.1039934712 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
6 Hb_007120_070 0.1104724676 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
7 Hb_030765_020 0.1112361911 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_124315_040 0.1124895158 - - hypothetical protein 19 [Hevea brasiliensis]
9 Hb_000178_110 0.1135756443 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000130_390 0.1244052045 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
11 Hb_001722_040 0.1248864885 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
12 Hb_000062_580 0.125137226 - - ATP binding protein, putative [Ricinus communis]
13 Hb_000836_500 0.126199623 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
14 Hb_001999_120 0.1274676465 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
15 Hb_001109_120 0.1274763105 - - PREDICTED: acyl-CoA-binding protein-like [Nelumbo nucifera]
16 Hb_003581_090 0.1287873098 - - PREDICTED: galactose oxidase [Jatropha curcas]
17 Hb_012347_010 0.1306349461 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
18 Hb_006132_060 0.1350888047 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
19 Hb_008695_190 0.135304398 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
20 Hb_000957_040 0.1363164426 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]

Gene co-expression network

sample Hb_029584_140 Hb_029584_140 Hb_003540_230 Hb_003540_230 Hb_029584_140--Hb_003540_230 Hb_003038_180 Hb_003038_180 Hb_029584_140--Hb_003038_180 Hb_012799_060 Hb_012799_060 Hb_029584_140--Hb_012799_060 Hb_000580_170 Hb_000580_170 Hb_029584_140--Hb_000580_170 Hb_007120_070 Hb_007120_070 Hb_029584_140--Hb_007120_070 Hb_030765_020 Hb_030765_020 Hb_029584_140--Hb_030765_020 Hb_002235_230 Hb_002235_230 Hb_003540_230--Hb_002235_230 Hb_003540_230--Hb_000580_170 Hb_005016_130 Hb_005016_130 Hb_003540_230--Hb_005016_130 Hb_003540_230--Hb_012799_060 Hb_003540_230--Hb_003038_180 Hb_000062_580 Hb_000062_580 Hb_003038_180--Hb_000062_580 Hb_001999_120 Hb_001999_120 Hb_003038_180--Hb_001999_120 Hb_001722_040 Hb_001722_040 Hb_003038_180--Hb_001722_040 Hb_012522_030 Hb_012522_030 Hb_003038_180--Hb_012522_030 Hb_012799_060--Hb_000580_170 Hb_000078_030 Hb_000078_030 Hb_012799_060--Hb_000078_030 Hb_001741_080 Hb_001741_080 Hb_012799_060--Hb_001741_080 Hb_012799_060--Hb_030765_020 Hb_012799_060--Hb_005016_130 Hb_000580_170--Hb_000078_030 Hb_000580_170--Hb_001741_080 Hb_000580_170--Hb_005016_130 Hb_001102_010 Hb_001102_010 Hb_000580_170--Hb_001102_010 Hb_003020_310 Hb_003020_310 Hb_007120_070--Hb_003020_310 Hb_000178_110 Hb_000178_110 Hb_007120_070--Hb_000178_110 Hb_007120_070--Hb_003038_180 Hb_007120_070--Hb_000062_580 Hb_001035_040 Hb_001035_040 Hb_007120_070--Hb_001035_040 Hb_000143_050 Hb_000143_050 Hb_030765_020--Hb_000143_050 Hb_030765_020--Hb_000078_030 Hb_060668_010 Hb_060668_010 Hb_030765_020--Hb_060668_010 Hb_030765_020--Hb_001741_080 Hb_030765_020--Hb_000580_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.107 1.20359 0.537308 0.910215 5.09606 4.25909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6864 10.064 9.28046 0.908416 0.109541

CAGE analysis