Hb_029622_020

Information

Type -
Description -
Location Contig29622: 8254-9680
Sequence    

Annotation

kegg
ID rcu:RCOM_1501300
description hypothetical protein
nr
ID XP_002511001.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R9X6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1501300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029622_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004032_090 0.1317690988 - - PREDICTED: protein AIG1 [Jatropha curcas]
3 Hb_011716_050 0.1389018386 - - serine acetyltransferase [Hevea brasiliensis]
4 Hb_005649_010 0.1407932341 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
5 Hb_000953_040 0.1410731862 - - hypothetical protein OsJ_19135 [Oryza sativa Japonica Group]
6 Hb_114684_010 0.149892849 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]
7 Hb_000051_030 0.1526999226 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
8 Hb_004007_120 0.1550801066 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type isoform X1 [Populus euphratica]
9 Hb_002471_140 0.1559843016 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
10 Hb_068492_010 0.156461042 - - -
11 Hb_001842_060 0.1585821294 desease resistance Gene Name: ABC_trans_N hypothetical protein JCGZ_10908 [Jatropha curcas]
12 Hb_002662_090 0.1661119142 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
13 Hb_000977_090 0.1667786018 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
14 Hb_000421_020 0.1673404484 - - ascorbate peroxidase [Hevea brasiliensis]
15 Hb_000527_140 0.1697268571 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
16 Hb_029584_090 0.1700902489 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
17 Hb_110567_010 0.1702090698 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic-like [Jatropha curcas]
18 Hb_002343_020 0.1712683135 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
19 Hb_000914_130 0.171489911 - - copper-transporting atpase p-type, putative [Ricinus communis]
20 Hb_001123_190 0.1720974908 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]

Gene co-expression network

sample Hb_029622_020 Hb_029622_020 Hb_004032_090 Hb_004032_090 Hb_029622_020--Hb_004032_090 Hb_011716_050 Hb_011716_050 Hb_029622_020--Hb_011716_050 Hb_005649_010 Hb_005649_010 Hb_029622_020--Hb_005649_010 Hb_000953_040 Hb_000953_040 Hb_029622_020--Hb_000953_040 Hb_114684_010 Hb_114684_010 Hb_029622_020--Hb_114684_010 Hb_000051_030 Hb_000051_030 Hb_029622_020--Hb_000051_030 Hb_000008_430 Hb_000008_430 Hb_004032_090--Hb_000008_430 Hb_002343_020 Hb_002343_020 Hb_004032_090--Hb_002343_020 Hb_001123_190 Hb_001123_190 Hb_004032_090--Hb_001123_190 Hb_000009_150 Hb_000009_150 Hb_004032_090--Hb_000009_150 Hb_048476_040 Hb_048476_040 Hb_004032_090--Hb_048476_040 Hb_006052_060 Hb_006052_060 Hb_004032_090--Hb_006052_060 Hb_000107_440 Hb_000107_440 Hb_011716_050--Hb_000107_440 Hb_006846_020 Hb_006846_020 Hb_011716_050--Hb_006846_020 Hb_000038_040 Hb_000038_040 Hb_011716_050--Hb_000038_040 Hb_006935_010 Hb_006935_010 Hb_011716_050--Hb_006935_010 Hb_001959_120 Hb_001959_120 Hb_011716_050--Hb_001959_120 Hb_005649_010--Hb_002343_020 Hb_003964_010 Hb_003964_010 Hb_005649_010--Hb_003964_010 Hb_064985_010 Hb_064985_010 Hb_005649_010--Hb_064985_010 Hb_001377_130 Hb_001377_130 Hb_005649_010--Hb_001377_130 Hb_013938_010 Hb_013938_010 Hb_005649_010--Hb_013938_010 Hb_001318_110 Hb_001318_110 Hb_005649_010--Hb_001318_110 Hb_110567_010 Hb_110567_010 Hb_000953_040--Hb_110567_010 Hb_001195_020 Hb_001195_020 Hb_000953_040--Hb_001195_020 Hb_002471_140 Hb_002471_140 Hb_000953_040--Hb_002471_140 Hb_001842_060 Hb_001842_060 Hb_000953_040--Hb_001842_060 Hb_005504_030 Hb_005504_030 Hb_000953_040--Hb_005504_030 Hb_000527_140 Hb_000527_140 Hb_114684_010--Hb_000527_140 Hb_000527_070 Hb_000527_070 Hb_114684_010--Hb_000527_070 Hb_114684_010--Hb_004032_090 Hb_004007_120 Hb_004007_120 Hb_114684_010--Hb_004007_120 Hb_042202_020 Hb_042202_020 Hb_114684_010--Hb_042202_020 Hb_000347_020 Hb_000347_020 Hb_000051_030--Hb_000347_020 Hb_004286_030 Hb_004286_030 Hb_000051_030--Hb_004286_030 Hb_068492_010 Hb_068492_010 Hb_000051_030--Hb_068492_010 Hb_002662_090 Hb_002662_090 Hb_000051_030--Hb_002662_090 Hb_000051_030--Hb_001318_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.114774 3.19254 1.91804 1.19692 0.211489 0.0681127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.48443 0.285796 0.177257 2.42948 0.591608

CAGE analysis