Hb_029622_060

Information

Type -
Description -
Location Contig29622: 34315-38136
Sequence    

Annotation

kegg
ID pop:POPTR_0001s11820g
description POPTRDRAFT_1066420; hypothetical protein
nr
ID XP_012090501.1
description PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
swissprot
ID Q08448
description Putative lipase YOR059C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR059C PE=1 SV=1
trembl
ID A0A067JR29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26296 PE=4 SV=1
Gene Ontology
ID GO:0016787
description lipase yor059c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30997: 36583-36870 , PASA_asmbl_30998: 37037-38012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029622_060 0.0 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
2 Hb_002413_050 0.0710557659 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
3 Hb_123689_010 0.0731348138 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
4 Hb_003787_030 0.0774119588 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010697_020 0.0790354761 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002301_070 0.0795277527 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000815_120 0.0801611629 - - calcium ion binding protein, putative [Ricinus communis]
8 Hb_002044_070 0.0808232939 - - Chlorophyll a-b binding protein 3, chloroplastic [Theobroma cacao]
9 Hb_000221_130 0.0843312748 - - thylakoid lumenal 29 kDa protein, chloroplastic [Jatropha curcas]
10 Hb_002534_090 0.084700124 - - geranylgeranyl reductase [Hevea brasiliensis]
11 Hb_000928_260 0.0856413734 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
12 Hb_000704_020 0.0859655994 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007044_020 0.0879400799 - - unnamed protein product [Vitis vinifera]
14 Hb_004143_080 0.0889643908 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
15 Hb_001269_480 0.0912130647 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
16 Hb_001310_020 0.0913457886 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
17 Hb_000307_100 0.0947839884 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
18 Hb_000009_470 0.095078997 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
19 Hb_000983_200 0.0953695888 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
20 Hb_010812_030 0.095839221 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_029622_060 Hb_029622_060 Hb_002413_050 Hb_002413_050 Hb_029622_060--Hb_002413_050 Hb_123689_010 Hb_123689_010 Hb_029622_060--Hb_123689_010 Hb_003787_030 Hb_003787_030 Hb_029622_060--Hb_003787_030 Hb_010697_020 Hb_010697_020 Hb_029622_060--Hb_010697_020 Hb_002301_070 Hb_002301_070 Hb_029622_060--Hb_002301_070 Hb_000815_120 Hb_000815_120 Hb_029622_060--Hb_000815_120 Hb_002534_090 Hb_002534_090 Hb_002413_050--Hb_002534_090 Hb_011537_130 Hb_011537_130 Hb_002413_050--Hb_011537_130 Hb_002044_070 Hb_002044_070 Hb_002413_050--Hb_002044_070 Hb_018202_040 Hb_018202_040 Hb_002413_050--Hb_018202_040 Hb_005675_030 Hb_005675_030 Hb_002413_050--Hb_005675_030 Hb_123689_010--Hb_002534_090 Hb_000009_470 Hb_000009_470 Hb_123689_010--Hb_000009_470 Hb_011344_030 Hb_011344_030 Hb_123689_010--Hb_011344_030 Hb_007044_020 Hb_007044_020 Hb_123689_010--Hb_007044_020 Hb_001269_480 Hb_001269_480 Hb_123689_010--Hb_001269_480 Hb_003787_030--Hb_002301_070 Hb_000928_260 Hb_000928_260 Hb_003787_030--Hb_000928_260 Hb_006573_240 Hb_006573_240 Hb_003787_030--Hb_006573_240 Hb_003787_030--Hb_010697_020 Hb_003787_030--Hb_000815_120 Hb_004143_080 Hb_004143_080 Hb_003787_030--Hb_004143_080 Hb_001348_160 Hb_001348_160 Hb_010697_020--Hb_001348_160 Hb_010697_020--Hb_002301_070 Hb_010697_020--Hb_000928_260 Hb_001191_060 Hb_001191_060 Hb_010697_020--Hb_001191_060 Hb_010697_020--Hb_001269_480 Hb_002301_070--Hb_000928_260 Hb_002301_070--Hb_004143_080 Hb_002301_070--Hb_000815_120 Hb_002301_070--Hb_006573_240 Hb_000815_120--Hb_004143_080 Hb_004818_010 Hb_004818_010 Hb_000815_120--Hb_004818_010 Hb_000704_020 Hb_000704_020 Hb_000815_120--Hb_000704_020 Hb_001951_050 Hb_001951_050 Hb_000815_120--Hb_001951_050 Hb_003093_050 Hb_003093_050 Hb_000815_120--Hb_003093_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.13694 1.82654 1.63947 0.0142978 0.0133967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.034809 0.0273837 0.0512528 0.0328363 8.32936

CAGE analysis