Hb_029622_080

Information

Type transcription factor
Description TF Family: AP2
Location Contig29622: 43737-46757
Sequence    

Annotation

kegg
ID pop:POPTR_0003s15040g
description ethylene-responsive element-binding family protein
nr
ID KDP22468.1
description hypothetical protein JCGZ_26299 [Jatropha curcas]
swissprot
ID Q40478
description Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1
trembl
ID A0A067JI28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26299 PE=4 SV=1
Gene Ontology
ID GO:0008152
description ethylene-responsive transcription factor erf105-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 033_P04.ab1: 46043-46815

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029622_080 0.0 transcription factor TF Family: AP2 hypothetical protein JCGZ_26299 [Jatropha curcas]
2 Hb_032260_100 0.0378836799 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
3 Hb_000808_090 0.0739737786 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
4 Hb_000656_350 0.0834327079 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
5 Hb_000221_280 0.1011358506 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]
6 Hb_000571_030 0.1011533868 - - ammonium transporter, putative [Ricinus communis]
7 Hb_001257_040 0.1015843129 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
8 Hb_000529_050 0.1047337914 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
9 Hb_009476_010 0.107422438 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
10 Hb_011287_020 0.1075621025 - - ATP binding protein, putative [Ricinus communis]
11 Hb_004586_120 0.1092088167 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
12 Hb_001894_060 0.1148604032 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
13 Hb_001477_080 0.1159128866 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
14 Hb_007441_150 0.1161748266 - - Ankyrin repeat family protein [Theobroma cacao]
15 Hb_000422_050 0.1184128655 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
16 Hb_000322_020 0.1201837292 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
17 Hb_001956_160 0.1214183495 - - hypothetical protein L484_009438 [Morus notabilis]
18 Hb_000032_150 0.1227144783 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
19 Hb_000313_190 0.1228263244 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
20 Hb_124953_010 0.1242259358 - - hypothetical protein RCOM_1314600 [Ricinus communis]

Gene co-expression network

sample Hb_029622_080 Hb_029622_080 Hb_032260_100 Hb_032260_100 Hb_029622_080--Hb_032260_100 Hb_000808_090 Hb_000808_090 Hb_029622_080--Hb_000808_090 Hb_000656_350 Hb_000656_350 Hb_029622_080--Hb_000656_350 Hb_000221_280 Hb_000221_280 Hb_029622_080--Hb_000221_280 Hb_000571_030 Hb_000571_030 Hb_029622_080--Hb_000571_030 Hb_001257_040 Hb_001257_040 Hb_029622_080--Hb_001257_040 Hb_032260_100--Hb_000656_350 Hb_000529_050 Hb_000529_050 Hb_032260_100--Hb_000529_050 Hb_032260_100--Hb_000808_090 Hb_007441_150 Hb_007441_150 Hb_032260_100--Hb_007441_150 Hb_032260_100--Hb_000571_030 Hb_000665_090 Hb_000665_090 Hb_000808_090--Hb_000665_090 Hb_000808_090--Hb_000656_350 Hb_000627_130 Hb_000627_130 Hb_000808_090--Hb_000627_130 Hb_124953_010 Hb_124953_010 Hb_000808_090--Hb_124953_010 Hb_000925_110 Hb_000925_110 Hb_000656_350--Hb_000925_110 Hb_000656_350--Hb_000571_030 Hb_000032_150 Hb_000032_150 Hb_000656_350--Hb_000032_150 Hb_000731_020 Hb_000731_020 Hb_000221_280--Hb_000731_020 Hb_000221_280--Hb_000529_050 Hb_000313_190 Hb_000313_190 Hb_000221_280--Hb_000313_190 Hb_001213_140 Hb_001213_140 Hb_000221_280--Hb_001213_140 Hb_003071_040 Hb_003071_040 Hb_000221_280--Hb_003071_040 Hb_001619_140 Hb_001619_140 Hb_000571_030--Hb_001619_140 Hb_000571_030--Hb_000032_150 Hb_000571_030--Hb_001257_040 Hb_007858_020 Hb_007858_020 Hb_000571_030--Hb_007858_020 Hb_004586_120 Hb_004586_120 Hb_001257_040--Hb_004586_120 Hb_001257_040--Hb_000032_150 Hb_000422_050 Hb_000422_050 Hb_001257_040--Hb_000422_050 Hb_000322_020 Hb_000322_020 Hb_001257_040--Hb_000322_020 Hb_001257_040--Hb_124953_010 Hb_004032_220 Hb_004032_220 Hb_001257_040--Hb_004032_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.37304 347.9 128.886 102.027 2.29411 1.85861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.84567 1.54284 1.32484 6.20709 17.3736

CAGE analysis