Hb_029695_020

Information

Type -
Description -
Location Contig29695: 5648-18342
Sequence    

Annotation

kegg
ID rcu:RCOM_0521930
description beta-amylase, putative (EC:3.2.1.2)
nr
ID XP_012071010.1
description PREDICTED: inactive beta-amylase 4, chloroplastic [Jatropha curcas]
swissprot
ID Q9FM68
description Inactive beta-amylase 4, chloroplastic OS=Arabidopsis thaliana GN=BAM4 PE=2 SV=1
trembl
ID A0A067KWE3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01030 PE=3 SV=1
Gene Ontology
ID GO:0016798
description inactive beta-amylase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31053: 6103-6515 , PASA_asmbl_31054: 8738-14744
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029695_020 0.0 - - PREDICTED: inactive beta-amylase 4, chloroplastic [Jatropha curcas]
2 Hb_000926_010 0.0694034582 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
3 Hb_005542_050 0.078687271 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
4 Hb_001047_200 0.0789109397 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
5 Hb_000823_030 0.0838030984 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
6 Hb_012114_050 0.0861807137 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
7 Hb_000556_170 0.0863475899 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
8 Hb_000023_320 0.0868230843 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002325_040 0.0891287149 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
10 Hb_000723_110 0.0892591609 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
11 Hb_008160_030 0.0911696913 - - DNA binding protein, putative [Ricinus communis]
12 Hb_002890_100 0.0924343656 - - PREDICTED: mitotic spindle checkpoint protein MAD1 isoform X1 [Jatropha curcas]
13 Hb_026980_020 0.0929863664 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
14 Hb_000352_260 0.0946780971 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
15 Hb_000236_470 0.0953613197 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
16 Hb_000640_310 0.0956049514 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
17 Hb_001277_020 0.0959816545 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
18 Hb_007576_220 0.0986977961 - - PREDICTED: kanadaptin [Jatropha curcas]
19 Hb_008147_040 0.0991327097 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
20 Hb_000340_030 0.1004950396 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]

Gene co-expression network

sample Hb_029695_020 Hb_029695_020 Hb_000926_010 Hb_000926_010 Hb_029695_020--Hb_000926_010 Hb_005542_050 Hb_005542_050 Hb_029695_020--Hb_005542_050 Hb_001047_200 Hb_001047_200 Hb_029695_020--Hb_001047_200 Hb_000823_030 Hb_000823_030 Hb_029695_020--Hb_000823_030 Hb_012114_050 Hb_012114_050 Hb_029695_020--Hb_012114_050 Hb_000556_170 Hb_000556_170 Hb_029695_020--Hb_000556_170 Hb_000723_110 Hb_000723_110 Hb_000926_010--Hb_000723_110 Hb_000023_320 Hb_000023_320 Hb_000926_010--Hb_000023_320 Hb_000926_010--Hb_005542_050 Hb_010661_020 Hb_010661_020 Hb_000926_010--Hb_010661_020 Hb_000264_080 Hb_000264_080 Hb_000926_010--Hb_000264_080 Hb_005542_050--Hb_010661_020 Hb_002325_040 Hb_002325_040 Hb_005542_050--Hb_002325_040 Hb_005542_050--Hb_000556_170 Hb_010417_070 Hb_010417_070 Hb_005542_050--Hb_010417_070 Hb_002477_250 Hb_002477_250 Hb_005542_050--Hb_002477_250 Hb_000577_030 Hb_000577_030 Hb_001047_200--Hb_000577_030 Hb_001047_200--Hb_000823_030 Hb_000236_470 Hb_000236_470 Hb_001047_200--Hb_000236_470 Hb_000184_150 Hb_000184_150 Hb_001047_200--Hb_000184_150 Hb_001021_200 Hb_001021_200 Hb_001047_200--Hb_001021_200 Hb_001047_200--Hb_005542_050 Hb_003142_040 Hb_003142_040 Hb_000823_030--Hb_003142_040 Hb_088144_020 Hb_088144_020 Hb_000823_030--Hb_088144_020 Hb_007426_060 Hb_007426_060 Hb_000823_030--Hb_007426_060 Hb_000823_030--Hb_000184_150 Hb_001171_030 Hb_001171_030 Hb_000823_030--Hb_001171_030 Hb_007193_110 Hb_007193_110 Hb_012114_050--Hb_007193_110 Hb_004410_070 Hb_004410_070 Hb_012114_050--Hb_004410_070 Hb_012114_050--Hb_000556_170 Hb_000625_120 Hb_000625_120 Hb_012114_050--Hb_000625_120 Hb_000094_320 Hb_000094_320 Hb_012114_050--Hb_000094_320 Hb_007576_220 Hb_007576_220 Hb_012114_050--Hb_007576_220 Hb_000640_310 Hb_000640_310 Hb_000556_170--Hb_000640_310 Hb_000556_170--Hb_000236_470 Hb_003633_070 Hb_003633_070 Hb_000556_170--Hb_003633_070 Hb_001799_050 Hb_001799_050 Hb_000556_170--Hb_001799_050 Hb_140049_040 Hb_140049_040 Hb_000556_170--Hb_140049_040 Hb_004480_040 Hb_004480_040 Hb_000556_170--Hb_004480_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.1857 3.41311 2.21252 1.28873 2.32846 1.14846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0642 0.886696 0.823509 2.24298 0.997123

CAGE analysis