Hb_029695_080

Information

Type -
Description -
Location Contig29695: 44405-55108
Sequence    

Annotation

kegg
ID pmum:103326700
description NAD-dependent protein deacetylase SRT1
nr
ID XP_008227160.1
description PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume]
swissprot
ID Q9FE17
description NAD-dependent protein deacetylase SRT1 OS=Arabidopsis thaliana GN=SRT1 PE=2 SV=1
trembl
ID M5WH45
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005233mg PE=4 SV=1
Gene Ontology
ID GO:0070403
description nad-dependent protein deacetylase srt1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31064: 47140-52554 , PASA_asmbl_31066: 52565-53399 , PASA_asmbl_31067: 53400-55081
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029695_080 0.0 - - PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume]
2 Hb_003470_040 0.0527597452 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
3 Hb_000207_200 0.0676013775 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
4 Hb_033642_120 0.0726941988 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
5 Hb_002909_040 0.0729408485 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
6 Hb_001221_440 0.0734319683 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
7 Hb_003506_030 0.0769920366 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
8 Hb_000089_210 0.08232034 - - unknown [Medicago truncatula]
9 Hb_000847_080 0.0844183003 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
10 Hb_002110_160 0.0854088153 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
11 Hb_005649_100 0.0861311767 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
12 Hb_005977_030 0.0870878245 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
13 Hb_000163_260 0.0882998315 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
14 Hb_030414_040 0.0894642604 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
15 Hb_178968_060 0.089963618 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
16 Hb_001931_030 0.0899739958 - - PREDICTED: T-complex protein 1 subunit eta-like [Nelumbo nucifera]
17 Hb_000176_020 0.0907597712 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
18 Hb_171900_090 0.0912230106 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000120_890 0.0915985972 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
20 Hb_004096_160 0.0922528695 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]

Gene co-expression network

sample Hb_029695_080 Hb_029695_080 Hb_003470_040 Hb_003470_040 Hb_029695_080--Hb_003470_040 Hb_000207_200 Hb_000207_200 Hb_029695_080--Hb_000207_200 Hb_033642_120 Hb_033642_120 Hb_029695_080--Hb_033642_120 Hb_002909_040 Hb_002909_040 Hb_029695_080--Hb_002909_040 Hb_001221_440 Hb_001221_440 Hb_029695_080--Hb_001221_440 Hb_003506_030 Hb_003506_030 Hb_029695_080--Hb_003506_030 Hb_003470_040--Hb_000207_200 Hb_003470_040--Hb_033642_120 Hb_003687_120 Hb_003687_120 Hb_003470_040--Hb_003687_120 Hb_000089_210 Hb_000089_210 Hb_003470_040--Hb_000089_210 Hb_002110_160 Hb_002110_160 Hb_003470_040--Hb_002110_160 Hb_000207_200--Hb_002909_040 Hb_000207_200--Hb_000089_210 Hb_000207_200--Hb_033642_120 Hb_000207_200--Hb_002110_160 Hb_000868_120 Hb_000868_120 Hb_033642_120--Hb_000868_120 Hb_001439_220 Hb_001439_220 Hb_033642_120--Hb_001439_220 Hb_000661_120 Hb_000661_120 Hb_033642_120--Hb_000661_120 Hb_010287_020 Hb_010287_020 Hb_033642_120--Hb_010287_020 Hb_004096_160 Hb_004096_160 Hb_002909_040--Hb_004096_160 Hb_000513_090 Hb_000513_090 Hb_002909_040--Hb_000513_090 Hb_002909_040--Hb_000089_210 Hb_009449_060 Hb_009449_060 Hb_002909_040--Hb_009449_060 Hb_002326_110 Hb_002326_110 Hb_002909_040--Hb_002326_110 Hb_000111_170 Hb_000111_170 Hb_001221_440--Hb_000111_170 Hb_065525_080 Hb_065525_080 Hb_001221_440--Hb_065525_080 Hb_000019_190 Hb_000019_190 Hb_001221_440--Hb_000019_190 Hb_001635_110 Hb_001635_110 Hb_001221_440--Hb_001635_110 Hb_171900_090 Hb_171900_090 Hb_001221_440--Hb_171900_090 Hb_002014_010 Hb_002014_010 Hb_001221_440--Hb_002014_010 Hb_016448_010 Hb_016448_010 Hb_003506_030--Hb_016448_010 Hb_003506_030--Hb_000089_210 Hb_087313_010 Hb_087313_010 Hb_003506_030--Hb_087313_010 Hb_004531_150 Hb_004531_150 Hb_003506_030--Hb_004531_150 Hb_000958_080 Hb_000958_080 Hb_003506_030--Hb_000958_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.52677 8.49726 17.4196 8.14592 6.96228 4.75675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.20915 6.72329 3.06714 7.88227 7.59578

CAGE analysis