Hb_029695_090

Information

Type -
Description -
Location Contig29695: 83020-84393
Sequence    

Annotation

kegg
ID rcu:RCOM_0557780
description Patatin T5 precursor, putative
nr
ID XP_012092238.1
description PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
swissprot
ID Q93ZQ3
description Probable inactive patatin-like protein 9 OS=Arabidopsis thaliana GN=PLP9 PE=2 SV=1
trembl
ID A0A067JCC2
description Patatin OS=Jatropha curcas GN=JCGZ_21928 PE=3 SV=1
Gene Ontology
ID GO:0016787
description probable inactive patatin-like protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029695_090 0.0 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
2 Hb_000413_050 0.0673432925 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
3 Hb_004223_150 0.0762706271 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
4 Hb_000007_330 0.0826365876 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
5 Hb_011472_030 0.083947962 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
6 Hb_012395_090 0.0886851899 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
7 Hb_000881_020 0.0895030144 - - hypothetical protein MIMGU_mgv1a022110mg, partial [Erythranthe guttata]
8 Hb_005488_210 0.0897135911 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
9 Hb_000312_100 0.0920598967 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]
10 Hb_000333_020 0.0929024756 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
11 Hb_004635_120 0.0962664588 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
12 Hb_001519_090 0.097103602 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
13 Hb_002702_010 0.0980619631 - - carbohydrate binding protein, putative [Ricinus communis]
14 Hb_001942_010 0.0984476861 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
15 Hb_011013_040 0.1007908732 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
16 Hb_000116_160 0.1031711976 transcription factor TF Family: RWP-RK hypothetical protein JCGZ_22391 [Jatropha curcas]
17 Hb_001638_200 0.1035357185 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
18 Hb_001750_020 0.1054725765 - - PREDICTED: MATE efflux family protein 6-like isoform X1 [Jatropha curcas]
19 Hb_127629_010 0.1068218269 - - hypothetical protein CICLE_v10005216mg [Citrus clementina]
20 Hb_012098_100 0.1088498414 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_029695_090 Hb_029695_090 Hb_000413_050 Hb_000413_050 Hb_029695_090--Hb_000413_050 Hb_004223_150 Hb_004223_150 Hb_029695_090--Hb_004223_150 Hb_000007_330 Hb_000007_330 Hb_029695_090--Hb_000007_330 Hb_011472_030 Hb_011472_030 Hb_029695_090--Hb_011472_030 Hb_012395_090 Hb_012395_090 Hb_029695_090--Hb_012395_090 Hb_000881_020 Hb_000881_020 Hb_029695_090--Hb_000881_020 Hb_000116_160 Hb_000116_160 Hb_000413_050--Hb_000116_160 Hb_000413_050--Hb_000007_330 Hb_005488_210 Hb_005488_210 Hb_000413_050--Hb_005488_210 Hb_127629_010 Hb_127629_010 Hb_000413_050--Hb_127629_010 Hb_005890_010 Hb_005890_010 Hb_000413_050--Hb_005890_010 Hb_004223_150--Hb_012395_090 Hb_001266_010 Hb_001266_010 Hb_004223_150--Hb_001266_010 Hb_004223_150--Hb_000881_020 Hb_002702_010 Hb_002702_010 Hb_004223_150--Hb_002702_010 Hb_000608_270 Hb_000608_270 Hb_004223_150--Hb_000608_270 Hb_000007_330--Hb_005488_210 Hb_001926_070 Hb_001926_070 Hb_000007_330--Hb_001926_070 Hb_007007_100 Hb_007007_100 Hb_000007_330--Hb_007007_100 Hb_000890_170 Hb_000890_170 Hb_000007_330--Hb_000890_170 Hb_000156_110 Hb_000156_110 Hb_011472_030--Hb_000156_110 Hb_004635_120 Hb_004635_120 Hb_011472_030--Hb_004635_120 Hb_000020_090 Hb_000020_090 Hb_011472_030--Hb_000020_090 Hb_002066_110 Hb_002066_110 Hb_011472_030--Hb_002066_110 Hb_003873_020 Hb_003873_020 Hb_011472_030--Hb_003873_020 Hb_011013_040 Hb_011013_040 Hb_012395_090--Hb_011013_040 Hb_012395_090--Hb_002702_010 Hb_000155_020 Hb_000155_020 Hb_012395_090--Hb_000155_020 Hb_001942_010 Hb_001942_010 Hb_012395_090--Hb_001942_010 Hb_001159_050 Hb_001159_050 Hb_012395_090--Hb_001159_050 Hb_012098_100 Hb_012098_100 Hb_000881_020--Hb_012098_100 Hb_001158_130 Hb_001158_130 Hb_000881_020--Hb_001158_130 Hb_000042_280 Hb_000042_280 Hb_000881_020--Hb_000042_280 Hb_189208_070 Hb_189208_070 Hb_000881_020--Hb_189208_070 Hb_000881_020--Hb_004635_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0187619 2.16792 13.2673 8.95938 0 0.0329938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0857583 0.0337283 0 0.0811388 10.0249

CAGE analysis