Hb_029695_120

Information

Type -
Description -
Location Contig29695: 98694-104657
Sequence    

Annotation

kegg
ID pop:POPTR_0002s05320g
description POPTRDRAFT_551169; hypothetical protein
nr
ID XP_006386266.1
description hypothetical protein POPTR_0002s05320g [Populus trichocarpa]
swissprot
ID Q94KE2
description Protein TIME FOR COFFEE OS=Arabidopsis thaliana GN=TIC PE=1 SV=2
trembl
ID B9GSN1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s05320g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31073: 98819-99367 , PASA_asmbl_31074: 103671-104643 , PASA_asmbl_31076: 99404-102511 , PASA_asmbl_31077: 99404-101364
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029695_120 0.0 - - hypothetical protein POPTR_0002s05320g [Populus trichocarpa]
2 Hb_001484_090 0.0953258855 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
3 Hb_001059_060 0.1090209752 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
4 Hb_011174_080 0.1165019419 - - PREDICTED: sulfite oxidase [Jatropha curcas]
5 Hb_004162_220 0.1165949836 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
6 Hb_006816_010 0.1232554645 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003910_050 0.1264275624 - - PREDICTED: uncharacterized protein LOC105646926 [Jatropha curcas]
8 Hb_001439_070 0.1269400942 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
9 Hb_000175_270 0.1281812682 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
10 Hb_013968_010 0.1290417765 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
11 Hb_000256_160 0.1293790489 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
12 Hb_000487_370 0.1318554659 - - -
13 Hb_000094_150 0.1322545608 - - -
14 Hb_000665_070 0.1323246055 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3 isoform X1 [Jatropha curcas]
15 Hb_011188_010 0.1327325805 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
16 Hb_001404_090 0.1330724785 - - PREDICTED: kinesin-like protein NACK2 [Camelina sativa]
17 Hb_000109_260 0.1333830236 - - PREDICTED: WAT1-related protein At3g28050-like isoform X1 [Jatropha curcas]
18 Hb_001702_050 0.1336772141 - - PREDICTED: probable protein S-acyltransferase 19 isoform X1 [Jatropha curcas]
19 Hb_009078_020 0.1358369992 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
20 Hb_002010_090 0.1396427002 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_029695_120 Hb_029695_120 Hb_001484_090 Hb_001484_090 Hb_029695_120--Hb_001484_090 Hb_001059_060 Hb_001059_060 Hb_029695_120--Hb_001059_060 Hb_011174_080 Hb_011174_080 Hb_029695_120--Hb_011174_080 Hb_004162_220 Hb_004162_220 Hb_029695_120--Hb_004162_220 Hb_006816_010 Hb_006816_010 Hb_029695_120--Hb_006816_010 Hb_003910_050 Hb_003910_050 Hb_029695_120--Hb_003910_050 Hb_002809_160 Hb_002809_160 Hb_001484_090--Hb_002809_160 Hb_001702_050 Hb_001702_050 Hb_001484_090--Hb_001702_050 Hb_009078_020 Hb_009078_020 Hb_001484_090--Hb_009078_020 Hb_001484_090--Hb_001059_060 Hb_011188_010 Hb_011188_010 Hb_001484_090--Hb_011188_010 Hb_001059_060--Hb_009078_020 Hb_000853_330 Hb_000853_330 Hb_001059_060--Hb_000853_330 Hb_004052_110 Hb_004052_110 Hb_001059_060--Hb_004052_110 Hb_001059_060--Hb_011188_010 Hb_001998_210 Hb_001998_210 Hb_001059_060--Hb_001998_210 Hb_001439_070 Hb_001439_070 Hb_001059_060--Hb_001439_070 Hb_001235_130 Hb_001235_130 Hb_011174_080--Hb_001235_130 Hb_000157_140 Hb_000157_140 Hb_011174_080--Hb_000157_140 Hb_002805_090 Hb_002805_090 Hb_011174_080--Hb_002805_090 Hb_000256_160 Hb_000256_160 Hb_011174_080--Hb_000256_160 Hb_029879_120 Hb_029879_120 Hb_011174_080--Hb_029879_120 Hb_011174_080--Hb_001702_050 Hb_003058_140 Hb_003058_140 Hb_004162_220--Hb_003058_140 Hb_004577_010 Hb_004577_010 Hb_004162_220--Hb_004577_010 Hb_000172_360 Hb_000172_360 Hb_004162_220--Hb_000172_360 Hb_000976_110 Hb_000976_110 Hb_004162_220--Hb_000976_110 Hb_004162_220--Hb_006816_010 Hb_000109_260 Hb_000109_260 Hb_004162_220--Hb_000109_260 Hb_002010_090 Hb_002010_090 Hb_006816_010--Hb_002010_090 Hb_000510_190 Hb_000510_190 Hb_006816_010--Hb_000510_190 Hb_000487_370 Hb_000487_370 Hb_006816_010--Hb_000487_370 Hb_007576_180 Hb_007576_180 Hb_006816_010--Hb_007576_180 Hb_003490_060 Hb_003490_060 Hb_006816_010--Hb_003490_060 Hb_001105_100 Hb_001105_100 Hb_003910_050--Hb_001105_100 Hb_003910_050--Hb_004162_220 Hb_001511_090 Hb_001511_090 Hb_003910_050--Hb_001511_090 Hb_000617_250 Hb_000617_250 Hb_003910_050--Hb_000617_250 Hb_005695_080 Hb_005695_080 Hb_003910_050--Hb_005695_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.54463 14.3638 13.7665 10.1678 1.52883 4.73652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.31396 2.41705 0.510922 12.5798 19.1164

CAGE analysis