Hb_029799_010

Information

Type -
Description -
Location Contig29799: 1-2845
Sequence    

Annotation

kegg
ID rcu:RCOM_1251280
description trehalose-6-phosphate synthase, putative (EC:2.4.1.15 3.1.3.12)
nr
ID XP_002522255.1
description trehalose-6-phosphate synthase, putative [Ricinus communis]
swissprot
ID Q9LMI0
description Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 OS=Arabidopsis thaliana GN=TPS7 PE=1 SV=1
trembl
ID B9S8D6
description Trehalose-6-phosphate synthase, putative OS=Ricinus communis GN=RCOM_1251280 PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable -trehalose-phosphate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029799_010 0.0 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
2 Hb_000661_290 0.0915401398 - - PREDICTED: NAD(H) kinase 1-like isoform X1 [Populus euphratica]
3 Hb_000818_010 0.0999643918 - - Calmodulin-domain protein kinase 5 isoform 1 [Theobroma cacao]
4 Hb_000983_090 0.1015839281 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
5 Hb_004204_170 0.101719155 - - synaptosomal associated protein, putative [Ricinus communis]
6 Hb_000856_190 0.1037015431 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
7 Hb_000398_010 0.1048353392 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000417_310 0.1094058703 - - uncharacterized protein LOC100272531 [Zea mays]
9 Hb_004109_040 0.1148677494 - - PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial [Jatropha curcas]
10 Hb_000723_200 0.1162625034 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
11 Hb_000331_670 0.1200687635 - - PREDICTED: protein tipD [Jatropha curcas]
12 Hb_013399_100 0.1204318708 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005016_160 0.1241899578 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
14 Hb_002843_120 0.1249268193 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
15 Hb_012055_060 0.1254839907 - - PREDICTED: uncharacterized protein LOC105639799 isoform X1 [Jatropha curcas]
16 Hb_000077_140 0.1256237054 - - structural constituent of cell wall, putative [Ricinus communis]
17 Hb_011519_010 0.125825345 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
18 Hb_000676_010 0.1270728554 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Jatropha curcas]
19 Hb_005000_190 0.1275388121 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 64 [Jatropha curcas]
20 Hb_105105_020 0.1275451721 - - vacuolar protein sorting vps41, putative [Ricinus communis]

Gene co-expression network

sample Hb_029799_010 Hb_029799_010 Hb_000661_290 Hb_000661_290 Hb_029799_010--Hb_000661_290 Hb_000818_010 Hb_000818_010 Hb_029799_010--Hb_000818_010 Hb_000983_090 Hb_000983_090 Hb_029799_010--Hb_000983_090 Hb_004204_170 Hb_004204_170 Hb_029799_010--Hb_004204_170 Hb_000856_190 Hb_000856_190 Hb_029799_010--Hb_000856_190 Hb_000398_010 Hb_000398_010 Hb_029799_010--Hb_000398_010 Hb_000521_320 Hb_000521_320 Hb_000661_290--Hb_000521_320 Hb_006816_350 Hb_006816_350 Hb_000661_290--Hb_006816_350 Hb_000868_110 Hb_000868_110 Hb_000661_290--Hb_000868_110 Hb_002671_140 Hb_002671_140 Hb_000661_290--Hb_002671_140 Hb_004586_140 Hb_004586_140 Hb_000661_290--Hb_004586_140 Hb_013399_100 Hb_013399_100 Hb_000661_290--Hb_013399_100 Hb_024071_010 Hb_024071_010 Hb_000818_010--Hb_024071_010 Hb_000818_010--Hb_000661_290 Hb_000818_010--Hb_000856_190 Hb_000818_010--Hb_000983_090 Hb_000818_010--Hb_000398_010 Hb_005016_160 Hb_005016_160 Hb_000818_010--Hb_005016_160 Hb_000983_090--Hb_000856_190 Hb_002411_030 Hb_002411_030 Hb_000983_090--Hb_002411_030 Hb_012762_030 Hb_012762_030 Hb_000983_090--Hb_012762_030 Hb_000983_090--Hb_004204_170 Hb_012055_060 Hb_012055_060 Hb_000983_090--Hb_012055_060 Hb_000331_670 Hb_000331_670 Hb_000983_090--Hb_000331_670 Hb_004204_170--Hb_000856_190 Hb_000085_100 Hb_000085_100 Hb_004204_170--Hb_000085_100 Hb_001617_050 Hb_001617_050 Hb_004204_170--Hb_001617_050 Hb_001178_140 Hb_001178_140 Hb_004204_170--Hb_001178_140 Hb_001277_270 Hb_001277_270 Hb_004204_170--Hb_001277_270 Hb_000334_220 Hb_000334_220 Hb_000856_190--Hb_000334_220 Hb_000856_190--Hb_000085_100 Hb_000856_190--Hb_012762_030 Hb_000398_010--Hb_005016_160 Hb_000676_010 Hb_000676_010 Hb_000398_010--Hb_000676_010 Hb_005541_010 Hb_005541_010 Hb_000398_010--Hb_005541_010 Hb_008725_260 Hb_008725_260 Hb_000398_010--Hb_008725_260 Hb_000230_120 Hb_000230_120 Hb_000398_010--Hb_000230_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.6714 137.213 121.446 78.8862 94.1138 100.986
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
104.148 76.3894 186.854 38.9031 42.2334

CAGE analysis