Hb_029866_020

Information

Type -
Description -
Location Contig29866: 2114-6772
Sequence    

Annotation

kegg
ID rcu:RCOM_1580610
description mitochondrial carrier protein, putative
nr
ID XP_012090123.1
description PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
swissprot
ID Q944H5
description Mitochondrial carrier protein MTM1 OS=Arabidopsis thaliana GN=MTM1 PE=2 SV=1
trembl
ID A0A067JEC6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26008 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial carrier protein mtm1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31201: 2377-6730
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029866_020 0.0 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
2 Hb_000347_410 0.0616886842 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
3 Hb_001396_100 0.0686328076 - - DNA binding protein, putative [Ricinus communis]
4 Hb_000240_090 0.0721233979 - - Rab5 [Hevea brasiliensis]
5 Hb_005731_170 0.0747605595 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
6 Hb_011953_020 0.0797849435 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
7 Hb_007943_090 0.0815136938 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
8 Hb_003376_030 0.0838579287 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
9 Hb_004586_320 0.0848494707 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
10 Hb_004724_340 0.0855472834 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
11 Hb_000046_290 0.086714891 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
12 Hb_000146_020 0.0868623607 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
13 Hb_012675_060 0.0881451771 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
14 Hb_001519_050 0.0886034709 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
15 Hb_002374_390 0.0901322962 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
16 Hb_001191_090 0.091261047 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
17 Hb_148200_010 0.0913111983 - - hypothetical protein 33 [Hevea brasiliensis]
18 Hb_031862_110 0.092524415 - - calcium-dependent protein kinase [Hevea brasiliensis]
19 Hb_000009_160 0.0925487892 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
20 Hb_002056_060 0.0933219464 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_029866_020 Hb_029866_020 Hb_000347_410 Hb_000347_410 Hb_029866_020--Hb_000347_410 Hb_001396_100 Hb_001396_100 Hb_029866_020--Hb_001396_100 Hb_000240_090 Hb_000240_090 Hb_029866_020--Hb_000240_090 Hb_005731_170 Hb_005731_170 Hb_029866_020--Hb_005731_170 Hb_011953_020 Hb_011953_020 Hb_029866_020--Hb_011953_020 Hb_007943_090 Hb_007943_090 Hb_029866_020--Hb_007943_090 Hb_000146_020 Hb_000146_020 Hb_000347_410--Hb_000146_020 Hb_000025_120 Hb_000025_120 Hb_000347_410--Hb_000025_120 Hb_003376_030 Hb_003376_030 Hb_000347_410--Hb_003376_030 Hb_004586_320 Hb_004586_320 Hb_000347_410--Hb_004586_320 Hb_000347_410--Hb_000240_090 Hb_001904_090 Hb_001904_090 Hb_001396_100--Hb_001904_090 Hb_001191_090 Hb_001191_090 Hb_001396_100--Hb_001191_090 Hb_001396_100--Hb_000240_090 Hb_000181_300 Hb_000181_300 Hb_001396_100--Hb_000181_300 Hb_006831_120 Hb_006831_120 Hb_001396_100--Hb_006831_120 Hb_000120_680 Hb_000120_680 Hb_000240_090--Hb_000120_680 Hb_004635_100 Hb_004635_100 Hb_000240_090--Hb_004635_100 Hb_129204_030 Hb_129204_030 Hb_000240_090--Hb_129204_030 Hb_021409_030 Hb_021409_030 Hb_000240_090--Hb_021409_030 Hb_003455_040 Hb_003455_040 Hb_005731_170--Hb_003455_040 Hb_001998_050 Hb_001998_050 Hb_005731_170--Hb_001998_050 Hb_002374_390 Hb_002374_390 Hb_005731_170--Hb_002374_390 Hb_148200_010 Hb_148200_010 Hb_005731_170--Hb_148200_010 Hb_005731_170--Hb_003376_030 Hb_001829_060 Hb_001829_060 Hb_005731_170--Hb_001829_060 Hb_002005_020 Hb_002005_020 Hb_011953_020--Hb_002005_020 Hb_093458_050 Hb_093458_050 Hb_011953_020--Hb_093458_050 Hb_003551_050 Hb_003551_050 Hb_011953_020--Hb_003551_050 Hb_001519_050 Hb_001519_050 Hb_011953_020--Hb_001519_050 Hb_001519_030 Hb_001519_030 Hb_011953_020--Hb_001519_030 Hb_000009_160 Hb_000009_160 Hb_007943_090--Hb_000009_160 Hb_007943_090--Hb_000146_020 Hb_008289_060 Hb_008289_060 Hb_007943_090--Hb_008289_060 Hb_007943_090--Hb_004586_320 Hb_007943_090--Hb_001998_050 Hb_007943_090--Hb_003376_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.48919 4.24008 4.83792 4.38904 5.39781 8.21176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5667 17.5089 20.2163 7.10114 3.79378

CAGE analysis