Hb_029866_040

Information

Type -
Description -
Location Contig29866: 29495-31851
Sequence    

Annotation

kegg
ID rcu:RCOM_1580630
description hypothetical protein
nr
ID XP_012090124.1
description PREDICTED: plastid division protein PDV1 [Jatropha curcas]
swissprot
ID Q9FK13
description Plastid division protein PDV1 OS=Arabidopsis thaliana GN=PDV1 PE=1 SV=1
trembl
ID A0A067JRN3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26010 PE=4 SV=1
Gene Ontology
ID GO:0010020
description plastid division protein pdv1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029866_040 0.0 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
2 Hb_000377_060 0.0655854964 - - ARF GTPase activator, putative [Ricinus communis]
3 Hb_005431_010 0.0685448222 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
4 Hb_000001_050 0.0701358929 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
5 Hb_011381_100 0.0748830128 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Jatropha curcas]
6 Hb_001109_020 0.0797388661 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000009_160 0.0797870091 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
8 Hb_000046_110 0.0809667356 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
9 Hb_000979_230 0.0850503035 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
10 Hb_000963_180 0.0866457695 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
11 Hb_003632_010 0.0903142533 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004705_100 0.0912443012 - - PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Jatropha curcas]
13 Hb_000023_340 0.0920382455 - - PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]
14 Hb_000205_270 0.0921143515 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
15 Hb_000671_150 0.0944200559 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
16 Hb_001008_060 0.0944839142 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]
17 Hb_001105_070 0.098978199 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
18 Hb_005686_060 0.1007160322 - - PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]
19 Hb_005289_030 0.1007921791 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
20 Hb_009773_020 0.1010479592 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]

Gene co-expression network

sample Hb_029866_040 Hb_029866_040 Hb_000377_060 Hb_000377_060 Hb_029866_040--Hb_000377_060 Hb_005431_010 Hb_005431_010 Hb_029866_040--Hb_005431_010 Hb_000001_050 Hb_000001_050 Hb_029866_040--Hb_000001_050 Hb_011381_100 Hb_011381_100 Hb_029866_040--Hb_011381_100 Hb_001109_020 Hb_001109_020 Hb_029866_040--Hb_001109_020 Hb_000009_160 Hb_000009_160 Hb_029866_040--Hb_000009_160 Hb_000377_060--Hb_001109_020 Hb_000377_060--Hb_011381_100 Hb_003018_190 Hb_003018_190 Hb_000377_060--Hb_003018_190 Hb_003632_010 Hb_003632_010 Hb_000377_060--Hb_003632_010 Hb_008311_010 Hb_008311_010 Hb_000377_060--Hb_008311_010 Hb_001105_070 Hb_001105_070 Hb_005431_010--Hb_001105_070 Hb_005431_010--Hb_000009_160 Hb_000705_210 Hb_000705_210 Hb_005431_010--Hb_000705_210 Hb_000905_200 Hb_000905_200 Hb_005431_010--Hb_000905_200 Hb_009773_020 Hb_009773_020 Hb_005431_010--Hb_009773_020 Hb_000046_110 Hb_000046_110 Hb_000001_050--Hb_000046_110 Hb_071736_020 Hb_071736_020 Hb_000001_050--Hb_071736_020 Hb_000001_050--Hb_008311_010 Hb_001677_110 Hb_001677_110 Hb_000001_050--Hb_001677_110 Hb_000260_120 Hb_000260_120 Hb_000001_050--Hb_000260_120 Hb_003055_120 Hb_003055_120 Hb_011381_100--Hb_003055_120 Hb_011381_100--Hb_005431_010 Hb_000510_320 Hb_000510_320 Hb_011381_100--Hb_000510_320 Hb_011381_100--Hb_000009_160 Hb_001829_060 Hb_001829_060 Hb_001109_020--Hb_001829_060 Hb_001109_020--Hb_000046_110 Hb_003927_130 Hb_003927_130 Hb_001109_020--Hb_003927_130 Hb_000205_270 Hb_000205_270 Hb_001109_020--Hb_000205_270 Hb_000883_050 Hb_000883_050 Hb_001109_020--Hb_000883_050 Hb_000086_070 Hb_000086_070 Hb_001109_020--Hb_000086_070 Hb_000671_090 Hb_000671_090 Hb_000009_160--Hb_000671_090 Hb_007943_090 Hb_007943_090 Hb_000009_160--Hb_007943_090 Hb_000009_160--Hb_000205_270 Hb_016065_010 Hb_016065_010 Hb_000009_160--Hb_016065_010 Hb_055062_030 Hb_055062_030 Hb_000009_160--Hb_055062_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.73172 3.33223 2.14526 7.39873 6.54683 9.62645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5728 16.6334 17.306 4.57663 1.89311

CAGE analysis