Hb_029866_050

Information

Type transcription factor
Description TF Family: ERF
Location Contig29866: 39097-40152
Sequence    

Annotation

kegg
ID tcc:TCM_015336
description Ethylene-responsive transcription factor, putative
nr
ID XP_012090126.1
description PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
swissprot
ID Q9SUE3
description Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=1 SV=2
trembl
ID A0A067JQB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26011 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor crf4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31203: 39153-39653 , PASA_asmbl_31205: 40475-40720
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029866_050 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
2 Hb_006698_020 0.1020261642 - - hypothetical protein JCGZ_04585 [Jatropha curcas]
3 Hb_000649_160 0.1077585813 - - PREDICTED: nudix hydrolase 18, mitochondrial [Jatropha curcas]
4 Hb_000003_420 0.1112970144 - - o-methyltransferase, putative [Ricinus communis]
5 Hb_001568_120 0.113946992 - - hypothetical protein JCGZ_05918 [Jatropha curcas]
6 Hb_000359_080 0.1197348181 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
7 Hb_000473_080 0.1264676409 - - PREDICTED: lipase-like PAD4 [Populus euphratica]
8 Hb_003914_050 0.1282367091 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
9 Hb_000000_070 0.1290195386 - - allene oxide synthase [Hevea brasiliensis]
10 Hb_174380_010 0.1291888732 - - kinase, putative [Ricinus communis]
11 Hb_117127_010 0.1295294662 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH106 [Jatropha curcas]
12 Hb_002529_080 0.1339926535 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
13 Hb_002284_020 0.1347388755 - - PREDICTED: probable inorganic phosphate transporter 1-9 [Jatropha curcas]
14 Hb_009476_010 0.1364736117 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
15 Hb_008667_030 0.1372488167 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
16 Hb_002234_200 0.137692642 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
17 Hb_029238_020 0.139187428 - - PREDICTED: expansin-like A1 [Jatropha curcas]
18 Hb_000094_010 0.1394198326 - - lrr receptor protein kinase, putative [Ricinus communis]
19 Hb_013720_010 0.1427817576 - - Putative DNA repair RAD23-3 -like protein [Gossypium arboreum]
20 Hb_001104_270 0.1466206412 - - hypothetical protein POPTR_0007s13980g [Populus trichocarpa]

Gene co-expression network

sample Hb_029866_050 Hb_029866_050 Hb_006698_020 Hb_006698_020 Hb_029866_050--Hb_006698_020 Hb_000649_160 Hb_000649_160 Hb_029866_050--Hb_000649_160 Hb_000003_420 Hb_000003_420 Hb_029866_050--Hb_000003_420 Hb_001568_120 Hb_001568_120 Hb_029866_050--Hb_001568_120 Hb_000359_080 Hb_000359_080 Hb_029866_050--Hb_000359_080 Hb_000473_080 Hb_000473_080 Hb_029866_050--Hb_000473_080 Hb_013720_010 Hb_013720_010 Hb_006698_020--Hb_013720_010 Hb_008667_030 Hb_008667_030 Hb_006698_020--Hb_008667_030 Hb_000000_070 Hb_000000_070 Hb_006698_020--Hb_000000_070 Hb_000331_710 Hb_000331_710 Hb_006698_020--Hb_000331_710 Hb_002529_080 Hb_002529_080 Hb_006698_020--Hb_002529_080 Hb_000649_160--Hb_006698_020 Hb_001104_270 Hb_001104_270 Hb_000649_160--Hb_001104_270 Hb_000649_160--Hb_001568_120 Hb_000649_160--Hb_013720_010 Hb_007254_050 Hb_007254_050 Hb_000649_160--Hb_007254_050 Hb_000397_090 Hb_000397_090 Hb_000003_420--Hb_000397_090 Hb_000003_420--Hb_000473_080 Hb_073119_010 Hb_073119_010 Hb_000003_420--Hb_073119_010 Hb_000003_420--Hb_006698_020 Hb_000363_110 Hb_000363_110 Hb_000003_420--Hb_000363_110 Hb_001568_120--Hb_000000_070 Hb_117127_010 Hb_117127_010 Hb_001568_120--Hb_117127_010 Hb_001568_120--Hb_006698_020 Hb_009683_010 Hb_009683_010 Hb_001568_120--Hb_009683_010 Hb_041145_010 Hb_041145_010 Hb_001568_120--Hb_041145_010 Hb_000172_080 Hb_000172_080 Hb_000359_080--Hb_000172_080 Hb_000359_080--Hb_000473_080 Hb_000359_080--Hb_000003_420 Hb_000103_400 Hb_000103_400 Hb_000359_080--Hb_000103_400 Hb_000359_080--Hb_000363_110 Hb_000752_020 Hb_000752_020 Hb_000473_080--Hb_000752_020 Hb_000473_080--Hb_073119_010 Hb_000473_080--Hb_000103_400 Hb_002272_140 Hb_002272_140 Hb_000473_080--Hb_002272_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0414045 14.4362 3.82921 4.26016 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0473722 0.260819 0.275277 1.85565 1.07117

CAGE analysis