Hb_029866_060

Information

Type -
Description -
Location Contig29866: 46657-49747
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012628mg
description hypothetical protein
nr
ID XP_007218529.1
description hypothetical protein PRUPE_ppa012628mg [Prunus persica]
swissprot
ID P35133
description Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1
trembl
ID M5XDZ1
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012628mg PE=3 SV=1
Gene Ontology
ID GO:0005622
description ubiquitin-conjugating enzyme e2 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31206: 46978-49649 , PASA_asmbl_31207: 46660-49649 , PASA_asmbl_31208: 46660-49561 , PASA_asmbl_31209: 48511-48661
cDNA
(Sanger)
(ID:Location)		 006_O24.ab1: 47040-49598 , 020_D19.ab1: 46661-49605 , 037_M16.ab1: 46692-49547 , 049_E15.ab1: 46832-49598

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029866_060 0.0 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
2 Hb_003656_070 0.0633753916 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
3 Hb_008173_090 0.0640667554 - - glutathione peroxidase, putative [Ricinus communis]
4 Hb_002284_010 0.0687955579 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000111_330 0.0690625088 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
6 Hb_002163_020 0.0733021261 transcription factor TF Family: PHD PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]
7 Hb_129204_030 0.0741084196 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
8 Hb_001047_230 0.0749085866 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_002454_030 0.0766899877 - - PREDICTED: mitochondrial substrate carrier family protein B [Jatropha curcas]
10 Hb_002301_140 0.0798163626 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
11 Hb_001235_190 0.0807552579 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
12 Hb_000608_370 0.082109104 - - acyl-carrier-protein [Triadica sebifera]
13 Hb_000167_140 0.0854266545 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
14 Hb_002182_060 0.0859544052 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
15 Hb_000788_090 0.0869985074 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X2 [Glycine max]
16 Hb_004586_320 0.0900698836 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
17 Hb_003106_050 0.0905079456 transcription factor TF Family: Orphans hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
18 Hb_000574_480 0.0909440278 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
19 Hb_001722_100 0.0918686923 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000347_410 0.0932765273 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]

Gene co-expression network

sample Hb_029866_060 Hb_029866_060 Hb_003656_070 Hb_003656_070 Hb_029866_060--Hb_003656_070 Hb_008173_090 Hb_008173_090 Hb_029866_060--Hb_008173_090 Hb_002284_010 Hb_002284_010 Hb_029866_060--Hb_002284_010 Hb_000111_330 Hb_000111_330 Hb_029866_060--Hb_000111_330 Hb_002163_020 Hb_002163_020 Hb_029866_060--Hb_002163_020 Hb_129204_030 Hb_129204_030 Hb_029866_060--Hb_129204_030 Hb_003656_070--Hb_008173_090 Hb_001047_230 Hb_001047_230 Hb_003656_070--Hb_001047_230 Hb_000574_480 Hb_000574_480 Hb_003656_070--Hb_000574_480 Hb_003656_070--Hb_000111_330 Hb_004586_320 Hb_004586_320 Hb_003656_070--Hb_004586_320 Hb_001235_190 Hb_001235_190 Hb_008173_090--Hb_001235_190 Hb_000200_100 Hb_000200_100 Hb_008173_090--Hb_000200_100 Hb_008173_090--Hb_000574_480 Hb_000970_010 Hb_000970_010 Hb_008173_090--Hb_000970_010 Hb_002182_060 Hb_002182_060 Hb_008173_090--Hb_002182_060 Hb_005941_040 Hb_005941_040 Hb_002284_010--Hb_005941_040 Hb_002284_010--Hb_002163_020 Hb_000635_180 Hb_000635_180 Hb_002284_010--Hb_000635_180 Hb_002301_140 Hb_002301_140 Hb_002284_010--Hb_002301_140 Hb_028995_040 Hb_028995_040 Hb_002284_010--Hb_028995_040 Hb_000111_330--Hb_000574_480 Hb_011173_050 Hb_011173_050 Hb_000111_330--Hb_011173_050 Hb_000201_120 Hb_000201_120 Hb_000111_330--Hb_000201_120 Hb_000111_330--Hb_129204_030 Hb_011224_110 Hb_011224_110 Hb_002163_020--Hb_011224_110 Hb_000915_090 Hb_000915_090 Hb_002163_020--Hb_000915_090 Hb_002163_020--Hb_005941_040 Hb_000240_090 Hb_000240_090 Hb_002163_020--Hb_000240_090 Hb_000608_370 Hb_000608_370 Hb_129204_030--Hb_000608_370 Hb_000167_140 Hb_000167_140 Hb_129204_030--Hb_000167_140 Hb_129204_030--Hb_001047_230 Hb_021409_030 Hb_021409_030 Hb_129204_030--Hb_021409_030 Hb_129204_030--Hb_000240_090 Hb_001277_070 Hb_001277_070 Hb_129204_030--Hb_001277_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
211.869 159.611 113.841 99.8102 149.041 144.173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
352.435 462.913 315.974 93.9642 56.4898

CAGE analysis