Hb_029866_100

Information

Type -
Description -
Location Contig29866: 70226-74682
Sequence    

Annotation

kegg
ID rcu:RCOM_1581340
description Beta-1,3-galactosyltransferase sqv-2, putative (EC:2.4.1.134)
nr
ID XP_012090131.1
description PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
swissprot
ID Q94F27
description Probable beta-1,3-galactosyltransferase 11 OS=Arabidopsis thaliana GN=B3GALT11 PE=2 SV=1
trembl
ID B9RIN6
description Beta-1,3-galactosyltransferase sqv-2, putative OS=Ricinus communis GN=RCOM_1581340 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable beta- -galactosyltransferase 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31216: 70206-74644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029866_100 0.0 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
2 Hb_001396_280 0.0840451322 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
3 Hb_001500_110 0.0957073461 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_012215_010 0.0976618455 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
5 Hb_000733_050 0.1038073985 - - PREDICTED: uncharacterized protein LOC105646910 isoform X2 [Jatropha curcas]
6 Hb_002837_060 0.1065532717 - - PREDICTED: uncharacterized protein At1g10890-like [Nelumbo nucifera]
7 Hb_000120_550 0.1073769295 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
8 Hb_000640_070 0.1085671445 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
9 Hb_007951_040 0.1099498213 - - signal peptidase family protein [Populus trichocarpa]
10 Hb_003897_040 0.1109649356 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
11 Hb_009485_020 0.1113907573 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
12 Hb_017295_010 0.1125087246 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
13 Hb_000664_110 0.1132823367 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
14 Hb_009049_020 0.1137288959 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
15 Hb_029904_020 0.114403126 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
16 Hb_003104_040 0.1150092155 - - PREDICTED: insulin-degrading enzyme isoform X1 [Jatropha curcas]
17 Hb_003687_210 0.1153326642 - - PREDICTED: malate dehydrogenase [Populus euphratica]
18 Hb_000933_010 0.1154983144 - - -
19 Hb_001789_030 0.1164647198 - - PREDICTED: signal peptide peptidase-like 1 [Jatropha curcas]
20 Hb_000208_260 0.1168094029 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_029866_100 Hb_029866_100 Hb_001396_280 Hb_001396_280 Hb_029866_100--Hb_001396_280 Hb_001500_110 Hb_001500_110 Hb_029866_100--Hb_001500_110 Hb_012215_010 Hb_012215_010 Hb_029866_100--Hb_012215_010 Hb_000733_050 Hb_000733_050 Hb_029866_100--Hb_000733_050 Hb_002837_060 Hb_002837_060 Hb_029866_100--Hb_002837_060 Hb_000120_550 Hb_000120_550 Hb_029866_100--Hb_000120_550 Hb_028308_010 Hb_028308_010 Hb_001396_280--Hb_028308_010 Hb_029904_020 Hb_029904_020 Hb_001396_280--Hb_029904_020 Hb_000031_280 Hb_000031_280 Hb_001396_280--Hb_000031_280 Hb_000392_370 Hb_000392_370 Hb_001396_280--Hb_000392_370 Hb_009049_020 Hb_009049_020 Hb_001396_280--Hb_009049_020 Hb_002828_020 Hb_002828_020 Hb_001500_110--Hb_002828_020 Hb_001500_110--Hb_009049_020 Hb_002876_320 Hb_002876_320 Hb_001500_110--Hb_002876_320 Hb_012322_020 Hb_012322_020 Hb_001500_110--Hb_012322_020 Hb_000617_100 Hb_000617_100 Hb_001500_110--Hb_000617_100 Hb_002539_110 Hb_002539_110 Hb_012215_010--Hb_002539_110 Hb_010272_010 Hb_010272_010 Hb_012215_010--Hb_010272_010 Hb_000640_070 Hb_000640_070 Hb_012215_010--Hb_000640_070 Hb_000362_170 Hb_000362_170 Hb_012215_010--Hb_000362_170 Hb_000664_110 Hb_000664_110 Hb_012215_010--Hb_000664_110 Hb_001005_030 Hb_001005_030 Hb_012215_010--Hb_001005_030 Hb_009485_020 Hb_009485_020 Hb_000733_050--Hb_009485_020 Hb_002804_020 Hb_002804_020 Hb_000733_050--Hb_002804_020 Hb_000733_050--Hb_002837_060 Hb_116349_060 Hb_116349_060 Hb_000733_050--Hb_116349_060 Hb_003858_040 Hb_003858_040 Hb_000733_050--Hb_003858_040 Hb_032990_010 Hb_032990_010 Hb_002837_060--Hb_032990_010 Hb_000101_380 Hb_000101_380 Hb_002837_060--Hb_000101_380 Hb_000983_170 Hb_000983_170 Hb_002837_060--Hb_000983_170 Hb_005503_040 Hb_005503_040 Hb_002837_060--Hb_005503_040 Hb_002837_060--Hb_001396_280 Hb_000879_160 Hb_000879_160 Hb_002837_060--Hb_000879_160 Hb_000120_550--Hb_032990_010 Hb_003897_040 Hb_003897_040 Hb_000120_550--Hb_003897_040 Hb_161994_030 Hb_161994_030 Hb_000120_550--Hb_161994_030 Hb_000737_030 Hb_000737_030 Hb_000120_550--Hb_000737_030 Hb_000579_070 Hb_000579_070 Hb_000120_550--Hb_000579_070 Hb_000120_550--Hb_116349_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.1882 11.5375 19.1379 33.2296 23.1206 22.2317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4579 5.85574 6.77042 17.4084 14.3234

CAGE analysis