Hb_029866_110

Information

Type desease resistance
Description Gene Name: ABC_membrane
Location Contig29866: 82663-89750
Sequence    

Annotation

kegg
ID rcu:RCOM_1581350
description multidrug resistance-associated protein 1, 3 (mrp1, 3), abc-transoprter, putative (EC:1.3.1.74)
nr
ID XP_012090136.1
description PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
swissprot
ID Q9LYS2
description ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2
trembl
ID B9RIN7
description Multidrug resistance-associated protein 1, 3 (Mrp1, 3), abc-transoprter, putative OS=Ricinus communis GN=RCOM_1581350 PE=3 SV=1
Gene Ontology
ID GO:0016021
description abc transporter c family member 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31217: 82715-89468 , PASA_asmbl_31218: 83369-89468
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029866_110 0.0 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
2 Hb_170878_050 0.0705587098 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
3 Hb_001660_050 0.0769420803 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Eucalyptus grandis]
4 Hb_123560_050 0.0930805415 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
5 Hb_016637_020 0.094025993 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
6 Hb_009659_040 0.0957262785 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER [Populus euphratica]
7 Hb_001819_010 0.0965274483 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
8 Hb_003767_010 0.0981964018 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
9 Hb_000191_100 0.098655439 - - cytochrome P450, putative [Ricinus communis]
10 Hb_029576_080 0.1104159242 - - Aspartic proteinase precursor, putative [Ricinus communis]
11 Hb_000597_080 0.1127630133 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
12 Hb_109489_010 0.1185488397 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
13 Hb_000917_120 0.1192951424 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002217_200 0.1227834334 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
15 Hb_010880_010 0.1242180313 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
16 Hb_002622_010 0.124227021 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
17 Hb_001109_130 0.1256255404 - - PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]
18 Hb_031862_200 0.1277949013 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
19 Hb_000377_160 0.1328046986 - - PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
20 Hb_000264_340 0.1346873239 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_029866_110 Hb_029866_110 Hb_170878_050 Hb_170878_050 Hb_029866_110--Hb_170878_050 Hb_001660_050 Hb_001660_050 Hb_029866_110--Hb_001660_050 Hb_123560_050 Hb_123560_050 Hb_029866_110--Hb_123560_050 Hb_016637_020 Hb_016637_020 Hb_029866_110--Hb_016637_020 Hb_009659_040 Hb_009659_040 Hb_029866_110--Hb_009659_040 Hb_001819_010 Hb_001819_010 Hb_029866_110--Hb_001819_010 Hb_170878_050--Hb_001660_050 Hb_170878_050--Hb_016637_020 Hb_170878_050--Hb_009659_040 Hb_170878_050--Hb_001819_010 Hb_001634_080 Hb_001634_080 Hb_170878_050--Hb_001634_080 Hb_002622_010 Hb_002622_010 Hb_001660_050--Hb_002622_010 Hb_001660_050--Hb_009659_040 Hb_029576_080 Hb_029576_080 Hb_001660_050--Hb_029576_080 Hb_000917_120 Hb_000917_120 Hb_001660_050--Hb_000917_120 Hb_123560_050--Hb_001819_010 Hb_000377_160 Hb_000377_160 Hb_123560_050--Hb_000377_160 Hb_003077_140 Hb_003077_140 Hb_123560_050--Hb_003077_140 Hb_007420_020 Hb_007420_020 Hb_123560_050--Hb_007420_020 Hb_026144_030 Hb_026144_030 Hb_123560_050--Hb_026144_030 Hb_127661_010 Hb_127661_010 Hb_016637_020--Hb_127661_010 Hb_000191_100 Hb_000191_100 Hb_016637_020--Hb_000191_100 Hb_003494_180 Hb_003494_180 Hb_016637_020--Hb_003494_180 Hb_007205_020 Hb_007205_020 Hb_016637_020--Hb_007205_020 Hb_009659_040--Hb_000917_120 Hb_138606_020 Hb_138606_020 Hb_009659_040--Hb_138606_020 Hb_000840_050 Hb_000840_050 Hb_009659_040--Hb_000840_050 Hb_006788_100 Hb_006788_100 Hb_001819_010--Hb_006788_100 Hb_001819_010--Hb_000191_100 Hb_001819_010--Hb_009659_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0160305 38.1664 20.7958 20.1166 0.0342524 0.0317994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.15425 0.0319461 0.0492299 61.1852 55.989

CAGE analysis