Hb_029879_010

Information

Type -
Description -
Location Contig29879: 2472-6849
Sequence    

Annotation

kegg
ID rcu:RCOM_0905350
description ribosomal pseudouridine synthase, putative
nr
ID XP_002518515.1
description ribosomal pseudouridine synthase, putative [Ricinus communis]
swissprot
ID Q9SVS0
description RNA pseudouridine synthase 6, chloroplastic OS=Arabidopsis thaliana GN=At4g21770 PE=2 SV=1
trembl
ID B9RXP6
description Ribosomal pseudouridine synthase, putative OS=Ricinus communis GN=RCOM_0905350 PE=4 SV=1
Gene Ontology
ID GO:0003723
description rna pseudouridine synthase chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31222: 2564-3806 , PASA_asmbl_31223: 4421-5729 , PASA_asmbl_31224: 6687-6885
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029879_010 0.0 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
2 Hb_003939_050 0.0681137313 - - protein with unknown function [Ricinus communis]
3 Hb_030736_100 0.0718913841 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000883_020 0.0744732498 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
5 Hb_002592_060 0.074724129 - - conserved hypothetical protein [Ricinus communis]
6 Hb_022693_140 0.0749521324 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
7 Hb_063716_100 0.0769406249 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
8 Hb_009545_080 0.0776339357 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
9 Hb_000331_260 0.0790063241 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
10 Hb_005269_070 0.0801185845 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
11 Hb_001014_160 0.08053989 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
12 Hb_000329_320 0.0808054474 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
13 Hb_000575_040 0.0809346981 - - PREDICTED: serine/arginine-rich splicing factor SC35 [Jatropha curcas]
14 Hb_000417_130 0.0816420892 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
15 Hb_004963_030 0.0822218392 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_001357_350 0.0824984155 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000804_040 0.0835526872 - - protein with unknown function [Ricinus communis]
18 Hb_168978_030 0.083651177 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
19 Hb_012395_230 0.0837942267 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
20 Hb_000331_110 0.0842053199 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]

Gene co-expression network

sample Hb_029879_010 Hb_029879_010 Hb_003939_050 Hb_003939_050 Hb_029879_010--Hb_003939_050 Hb_030736_100 Hb_030736_100 Hb_029879_010--Hb_030736_100 Hb_000883_020 Hb_000883_020 Hb_029879_010--Hb_000883_020 Hb_002592_060 Hb_002592_060 Hb_029879_010--Hb_002592_060 Hb_022693_140 Hb_022693_140 Hb_029879_010--Hb_022693_140 Hb_063716_100 Hb_063716_100 Hb_029879_010--Hb_063716_100 Hb_003939_050--Hb_030736_100 Hb_003939_050--Hb_000883_020 Hb_000819_080 Hb_000819_080 Hb_003939_050--Hb_000819_080 Hb_001141_020 Hb_001141_020 Hb_003939_050--Hb_001141_020 Hb_007632_030 Hb_007632_030 Hb_003939_050--Hb_007632_030 Hb_003025_110 Hb_003025_110 Hb_030736_100--Hb_003025_110 Hb_030736_100--Hb_000883_020 Hb_000575_040 Hb_000575_040 Hb_030736_100--Hb_000575_040 Hb_002271_030 Hb_002271_030 Hb_030736_100--Hb_002271_030 Hb_000879_200 Hb_000879_200 Hb_030736_100--Hb_000879_200 Hb_009545_080 Hb_009545_080 Hb_000883_020--Hb_009545_080 Hb_002997_080 Hb_002997_080 Hb_000883_020--Hb_002997_080 Hb_011995_010 Hb_011995_010 Hb_000883_020--Hb_011995_010 Hb_000230_560 Hb_000230_560 Hb_000883_020--Hb_000230_560 Hb_032986_010 Hb_032986_010 Hb_000883_020--Hb_032986_010 Hb_001357_350 Hb_001357_350 Hb_000883_020--Hb_001357_350 Hb_001021_150 Hb_001021_150 Hb_002592_060--Hb_001021_150 Hb_004846_220 Hb_004846_220 Hb_002592_060--Hb_004846_220 Hb_002263_020 Hb_002263_020 Hb_002592_060--Hb_002263_020 Hb_004254_090 Hb_004254_090 Hb_002592_060--Hb_004254_090 Hb_000317_050 Hb_000317_050 Hb_002592_060--Hb_000317_050 Hb_006483_110 Hb_006483_110 Hb_002592_060--Hb_006483_110 Hb_012022_150 Hb_012022_150 Hb_022693_140--Hb_012022_150 Hb_000804_040 Hb_000804_040 Hb_022693_140--Hb_000804_040 Hb_000224_160 Hb_000224_160 Hb_022693_140--Hb_000224_160 Hb_000184_170 Hb_000184_170 Hb_022693_140--Hb_000184_170 Hb_000137_040 Hb_000137_040 Hb_022693_140--Hb_000137_040 Hb_000351_120 Hb_000351_120 Hb_063716_100--Hb_000351_120 Hb_000417_130 Hb_000417_130 Hb_063716_100--Hb_000417_130 Hb_001357_250 Hb_001357_250 Hb_063716_100--Hb_001357_250 Hb_000345_380 Hb_000345_380 Hb_063716_100--Hb_000345_380 Hb_168978_030 Hb_168978_030 Hb_063716_100--Hb_168978_030 Hb_000617_180 Hb_000617_180 Hb_063716_100--Hb_000617_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.15021 2.31512 4.68384 2.70523 3.69943 5.60632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.69321 4.54331 3.69488 4.58 5.01374

CAGE analysis