Hb_029879_020

Information

Type -
Description -
Location Contig29879: 8926-10449
Sequence    

Annotation

kegg
ID rcu:RCOM_0905330
description cytochrome P450, putative (EC:1.14.14.1)
nr
ID XP_012091383.1
description PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
swissprot
ID P37123
description Cytochrome P450 77A1 (Fragment) OS=Solanum melongena GN=CYP77A1 PE=2 SV=1
trembl
ID A0A067JAJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21248 PE=3 SV=1
Gene Ontology
ID GO:0005886
description cytochrome p450 77a1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 028_A04.ab1: 9757-10491 , 035_M19.ab1: 9722-10482 , 040_A03.ab1: 9756-10491 , 040_L18.ab1: 9734-10491

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029879_020 0.0 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
2 Hb_007317_030 0.0225928527 - - -
3 Hb_000046_400 0.025696348 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000251_150 0.0415763696 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
5 Hb_000987_030 0.0478818629 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
6 Hb_154064_010 0.048991815 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
7 Hb_065774_010 0.0542294263 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
8 Hb_031862_220 0.0578587841 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
9 Hb_000979_120 0.0591328457 - - Pectinesterase-1 precursor, putative [Ricinus communis]
10 Hb_158001_010 0.0610987561 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
11 Hb_001049_130 0.0638774379 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
12 Hb_000179_010 0.0650170599 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
13 Hb_046825_010 0.0689675188 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
14 Hb_001053_070 0.0693691199 desease resistance Gene Name: NB-ARC hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
15 Hb_003528_100 0.069969138 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
16 Hb_005743_050 0.0706615853 - - unnamed protein product [Coffea canephora]
17 Hb_003186_030 0.071342133 transcription factor TF Family: MYB hypothetical protein POPTR_0012s05720g [Populus trichocarpa]
18 Hb_004452_070 0.0759247641 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
19 Hb_001348_160 0.0768867435 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
20 Hb_002391_340 0.0772397374 - - RNA polymerase II largest subunit [Liriodendron tulipifera]

Gene co-expression network

sample Hb_029879_020 Hb_029879_020 Hb_007317_030 Hb_007317_030 Hb_029879_020--Hb_007317_030 Hb_000046_400 Hb_000046_400 Hb_029879_020--Hb_000046_400 Hb_000251_150 Hb_000251_150 Hb_029879_020--Hb_000251_150 Hb_000987_030 Hb_000987_030 Hb_029879_020--Hb_000987_030 Hb_154064_010 Hb_154064_010 Hb_029879_020--Hb_154064_010 Hb_065774_010 Hb_065774_010 Hb_029879_020--Hb_065774_010 Hb_007317_030--Hb_000046_400 Hb_007317_030--Hb_065774_010 Hb_007317_030--Hb_154064_010 Hb_007317_030--Hb_000987_030 Hb_007317_030--Hb_000251_150 Hb_000046_400--Hb_000251_150 Hb_000179_010 Hb_000179_010 Hb_000046_400--Hb_000179_010 Hb_000046_400--Hb_000987_030 Hb_158001_010 Hb_158001_010 Hb_000046_400--Hb_158001_010 Hb_000251_150--Hb_000987_030 Hb_005743_050 Hb_005743_050 Hb_000251_150--Hb_005743_050 Hb_000251_150--Hb_000179_010 Hb_004452_070 Hb_004452_070 Hb_000251_150--Hb_004452_070 Hb_000987_030--Hb_005743_050 Hb_000987_030--Hb_158001_010 Hb_001049_130 Hb_001049_130 Hb_000987_030--Hb_001049_130 Hb_000979_120 Hb_000979_120 Hb_000987_030--Hb_000979_120 Hb_031862_220 Hb_031862_220 Hb_000987_030--Hb_031862_220 Hb_046825_010 Hb_046825_010 Hb_154064_010--Hb_046825_010 Hb_127349_020 Hb_127349_020 Hb_154064_010--Hb_127349_020 Hb_180094_010 Hb_180094_010 Hb_154064_010--Hb_180094_010 Hb_003528_100 Hb_003528_100 Hb_154064_010--Hb_003528_100 Hb_065774_010--Hb_003528_100 Hb_002391_340 Hb_002391_340 Hb_065774_010--Hb_002391_340 Hb_001232_070 Hb_001232_070 Hb_065774_010--Hb_001232_070 Hb_001437_170 Hb_001437_170 Hb_065774_010--Hb_001437_170 Hb_000160_120 Hb_000160_120 Hb_065774_010--Hb_000160_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0134624 0.419307 153.235 138.683 0 0.134523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0385099 434.124

CAGE analysis