Hb_029879_070

Information

Type -
Description -
Location Contig29879: 56699-66263
Sequence    

Annotation

kegg
ID rcu:RCOM_0905300
description hypothetical protein
nr
ID XP_012091380.1
description PREDICTED: phospholipase A I [Jatropha curcas]
swissprot
ID F4HX15
description Phospholipase A I OS=Arabidopsis thaliana GN=PLA1 PE=2 SV=1
trembl
ID A0A067JMP9
description Patatin OS=Jatropha curcas GN=JCGZ_21245 PE=3 SV=1
Gene Ontology
ID GO:0004620
description calcium-independent phospholipase a2-gamma

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31230: 57355-58637 , PASA_asmbl_31231: 58853-59550 , PASA_asmbl_31232: 59633-61996 , PASA_asmbl_31233: 62045-65954
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029879_070 0.0 - - PREDICTED: phospholipase A I [Jatropha curcas]
2 Hb_000254_090 0.0486755908 - - PREDICTED: la protein 2 [Jatropha curcas]
3 Hb_029510_050 0.0616634899 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
4 Hb_006275_070 0.0700468322 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
5 Hb_002685_210 0.0713145663 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
6 Hb_027380_220 0.0748123624 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
7 Hb_005291_050 0.0764751561 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
8 Hb_000172_290 0.0779306288 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
9 Hb_001971_010 0.0782347267 - - F23N19.4 [Arabidopsis thaliana]
10 Hb_026198_070 0.0800819218 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
11 Hb_001004_070 0.0804268692 - - conserved hypothetical protein [Ricinus communis]
12 Hb_024128_020 0.0807448796 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
13 Hb_000072_320 0.0815727013 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
14 Hb_006274_030 0.0852924721 - - F-box and wd40 domain protein, putative [Ricinus communis]
15 Hb_000340_230 0.085614373 - - synapse-associated protein, putative [Ricinus communis]
16 Hb_003994_150 0.0868855512 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 [Jatropha curcas]
17 Hb_003025_100 0.0872917958 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
18 Hb_000260_010 0.0882943132 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
19 Hb_001366_180 0.0885320197 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
20 Hb_000441_200 0.0895837298 - - PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_029879_070 Hb_029879_070 Hb_000254_090 Hb_000254_090 Hb_029879_070--Hb_000254_090 Hb_029510_050 Hb_029510_050 Hb_029879_070--Hb_029510_050 Hb_006275_070 Hb_006275_070 Hb_029879_070--Hb_006275_070 Hb_002685_210 Hb_002685_210 Hb_029879_070--Hb_002685_210 Hb_027380_220 Hb_027380_220 Hb_029879_070--Hb_027380_220 Hb_005291_050 Hb_005291_050 Hb_029879_070--Hb_005291_050 Hb_054865_150 Hb_054865_150 Hb_000254_090--Hb_054865_150 Hb_026198_070 Hb_026198_070 Hb_000254_090--Hb_026198_070 Hb_000254_090--Hb_029510_050 Hb_000156_010 Hb_000156_010 Hb_000254_090--Hb_000156_010 Hb_000172_290 Hb_000172_290 Hb_000254_090--Hb_000172_290 Hb_001357_020 Hb_001357_020 Hb_029510_050--Hb_001357_020 Hb_002518_260 Hb_002518_260 Hb_029510_050--Hb_002518_260 Hb_005686_090 Hb_005686_090 Hb_029510_050--Hb_005686_090 Hb_029510_050--Hb_002685_210 Hb_000479_250 Hb_000479_250 Hb_006275_070--Hb_000479_250 Hb_000656_010 Hb_000656_010 Hb_006275_070--Hb_000656_010 Hb_001936_130 Hb_001936_130 Hb_006275_070--Hb_001936_130 Hb_008176_010 Hb_008176_010 Hb_006275_070--Hb_008176_010 Hb_004159_020 Hb_004159_020 Hb_006275_070--Hb_004159_020 Hb_002685_210--Hb_000172_290 Hb_005490_030 Hb_005490_030 Hb_002685_210--Hb_005490_030 Hb_002685_210--Hb_000254_090 Hb_000631_080 Hb_000631_080 Hb_002685_210--Hb_000631_080 Hb_000260_010 Hb_000260_010 Hb_027380_220--Hb_000260_010 Hb_027380_220--Hb_001936_130 Hb_027380_220--Hb_005291_050 Hb_001004_070 Hb_001004_070 Hb_027380_220--Hb_001004_070 Hb_001912_110 Hb_001912_110 Hb_027380_220--Hb_001912_110 Hb_012498_010 Hb_012498_010 Hb_005291_050--Hb_012498_010 Hb_001902_030 Hb_001902_030 Hb_005291_050--Hb_001902_030 Hb_004109_080 Hb_004109_080 Hb_005291_050--Hb_004109_080 Hb_005291_050--Hb_000156_010 Hb_002263_020 Hb_002263_020 Hb_005291_050--Hb_002263_020 Hb_005291_050--Hb_000254_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.7946 2.35637 3.65322 7.63583 6.02797 6.43967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.51709 5.97817 7.89888 6.68973 8.49133

CAGE analysis