Hb_029879_090

Information

Type -
Description -
Location Contig29879: 69065-70715
Sequence    

Annotation

kegg
ID rcu:RCOM_0905280
description receptor serine-threonine protein kinase, putative (EC:2.7.10.2)
nr
ID XP_012091379.1
description PREDICTED: serine/threonine-protein kinase At3g07070 [Jatropha curcas]
swissprot
ID Q9FE20
description Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1
trembl
ID B9RXN9
description Receptor serine-threonine protein kinase, putative OS=Ricinus communis GN=RCOM_0905280 PE=3 SV=1
Gene Ontology
ID GO:0000166
description serine threonine-protein kinase pbs1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029879_090 0.0 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Jatropha curcas]
2 Hb_000563_260 0.1493019818 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
3 Hb_007426_050 0.1755603082 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
4 Hb_141194_010 0.1824137308 - - PREDICTED: protein ZINC INDUCED FACILITATOR 1-like isoform X2 [Populus euphratica]
5 Hb_000594_090 0.1972481195 - - PREDICTED: allene oxide cyclase 3, chloroplastic-like [Populus euphratica]
6 Hb_000103_030 0.2038047031 - - hypothetical protein VITISV_021700 [Vitis vinifera]
7 Hb_001348_230 0.2039789526 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
8 Hb_003007_010 0.2099834514 - - PREDICTED: probable peptide/nitrate transporter At3g43790 isoform X1 [Populus euphratica]
9 Hb_089100_050 0.2116295184 - - -
10 Hb_001369_210 0.2118531995 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
11 Hb_105602_020 0.2142914823 - - PREDICTED: 60S ribosomal protein L19-1-like [Populus euphratica]
12 Hb_002989_040 0.2164613666 - - hypothetical protein 1 [Hevea brasiliensis]
13 Hb_000352_160 0.2189778483 - - conserved hypothetical protein [Ricinus communis]
14 Hb_034482_040 0.2197777394 - - aspartate kinase, partial [Francisella tularensis]
15 Hb_001143_070 0.2210689496 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
16 Hb_000045_210 0.2212719994 - - -
17 Hb_002588_040 0.2222849494 - - Pathogenesis-related protein 1 [Theobroma cacao]
18 Hb_000920_320 0.2287540731 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
19 Hb_061383_010 0.2289922234 - - beta-1,3-glucanase [Hevea brasiliensis]
20 Hb_001396_090 0.2349807538 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]

Gene co-expression network

sample Hb_029879_090 Hb_029879_090 Hb_000563_260 Hb_000563_260 Hb_029879_090--Hb_000563_260 Hb_007426_050 Hb_007426_050 Hb_029879_090--Hb_007426_050 Hb_141194_010 Hb_141194_010 Hb_029879_090--Hb_141194_010 Hb_000594_090 Hb_000594_090 Hb_029879_090--Hb_000594_090 Hb_000103_030 Hb_000103_030 Hb_029879_090--Hb_000103_030 Hb_001348_230 Hb_001348_230 Hb_029879_090--Hb_001348_230 Hb_002588_040 Hb_002588_040 Hb_000563_260--Hb_002588_040 Hb_000563_260--Hb_001348_230 Hb_001146_060 Hb_001146_060 Hb_000563_260--Hb_001146_060 Hb_000352_160 Hb_000352_160 Hb_000563_260--Hb_000352_160 Hb_001369_210 Hb_001369_210 Hb_000563_260--Hb_001369_210 Hb_012053_040 Hb_012053_040 Hb_007426_050--Hb_012053_040 Hb_007426_050--Hb_000563_260 Hb_007426_050--Hb_001348_230 Hb_001369_600 Hb_001369_600 Hb_007426_050--Hb_001369_600 Hb_007426_050--Hb_141194_010 Hb_000045_210 Hb_000045_210 Hb_141194_010--Hb_000045_210 Hb_034482_040 Hb_034482_040 Hb_141194_010--Hb_034482_040 Hb_003007_010 Hb_003007_010 Hb_141194_010--Hb_003007_010 Hb_003226_240 Hb_003226_240 Hb_141194_010--Hb_003226_240 Hb_001143_070 Hb_001143_070 Hb_141194_010--Hb_001143_070 Hb_000592_060 Hb_000592_060 Hb_141194_010--Hb_000592_060 Hb_000836_490 Hb_000836_490 Hb_000594_090--Hb_000836_490 Hb_007885_050 Hb_007885_050 Hb_000594_090--Hb_007885_050 Hb_038134_010 Hb_038134_010 Hb_000594_090--Hb_038134_010 Hb_000594_090--Hb_000563_260 Hb_008725_040 Hb_008725_040 Hb_000594_090--Hb_008725_040 Hb_105602_020 Hb_105602_020 Hb_000103_030--Hb_105602_020 Hb_000103_030--Hb_001143_070 Hb_004461_020 Hb_004461_020 Hb_000103_030--Hb_004461_020 Hb_002989_040 Hb_002989_040 Hb_000103_030--Hb_002989_040 Hb_089100_050 Hb_089100_050 Hb_000103_030--Hb_089100_050 Hb_001425_070 Hb_001425_070 Hb_000103_030--Hb_001425_070 Hb_001348_230--Hb_000352_160 Hb_001348_230--Hb_002588_040 Hb_001348_230--Hb_001369_210 Hb_001348_230--Hb_001146_060 Hb_001348_230--Hb_001143_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0395083 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0738509 0.377621 0.162736 0.03486 0

CAGE analysis